Thamnophis sirtalis (common garter snake): 106547748
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Entry
106547748 CDS
T06107
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04140
Autophagy - animal
tsr04142
Lysosome biogenesis
tsr04148
Efferocytosis
tsr05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
106547748 (VPS39)
04140 Autophagy - animal
106547748 (VPS39)
04148 Efferocytosis
106547748 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
106547748 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tsr04131
]
106547748 (VPS39)
Membrane trafficking [BR:
tsr04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
106547748 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
VPS18_solenoid_2nd
Beta-prop_RIG_2nd
Beta-prop_WDR36-Utp21_1st
YpjP
Lgl_C
EcoR124_C
DUF4145
Motif
Other DBs
NCBI-GeneID:
106547748
NCBI-ProteinID:
XP_013920475
UniProt:
A0A6I9YAI3
LinkDB
All DBs
Position
Unknown
AA seq
875 aa
AA seq
DB search
MHDAFEPVTILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKETGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGATLFTCDLKHSDTGE
EVLRMCVAVKKKLQLFYWKDRKFHELQGDFSVPDVPKSMAWCKDSICVGFKRDYYLIKVD
GKGSIKELFPTGKQLEPLVVPLIDGKVVVGQDDLTVVLNEEGVCTQKCAFNWTDIPTAME
HQTPYVVAVLPRYVEIRTFEPRLLVQSIELHKPRFITSGGPNIVYVASNHFVWRLIPVSI
ATQIQQLLQDKQFELALQLADMKDDSDNEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAK
LGTDPTHVIGLYPELLPGDYKKQLQYPNAVPSLSAAELEKAHLALIDYLTHKRSQLVKKL
YDSDHQSTTSPLMEGTPTIKSKKKLIQIIDTTLLKCFLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
NLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRKKILNFLLENFKNLAIPYLEHVIDIW
NEIGSEFHNCLIQLYCEKVQGLMKEYLTSFPPDETPVPAGEEEGELGEYRKKLLSFLESS
NYYNAEQLISDFPFDGLLEERALLLGRMGNHEQALFIYVHILKDTKIAENYCHKHYDRNK
DGSKDVYLSLLRMYLSPPSVHCLGPIKMELLEPQANLQAALQVLELHHSKLDTTKAINLL
PANTQISEIRIFLEKVLEENAQKKRFNQILKKLLHAEFLRVQEERILHQQVKCIITEEKV
CGVCKKKIGNSAFARFPNAVVVHYFCSKDVGSMDT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagccagtgacgatcctggaaaaactgccgctgcagatcgactgc
ttggcggcttgggaagaatggctcctagttgggactaaacaaggacatcttttactttac
agaattcgaaaagaaactggctgcaacaggtttgaagtcacattagaaaaatcaaacaag
aacttctccaagaagatacagcagatccacgttgtatcccagttcaaaattttggtcagt
ttattagaaaataacatttatgttcatgatctgttgacctttcaacagatcacaacagtt
tccaaggcaaaaggtgcaactctcttcacttgtgatctaaagcactcggatactggagaa
gaggttcttagaatgtgtgtggcagtaaaaaagaagttacaactgttttattggaaggac
cgaaaattccatgaattgcagggagatttcagtgtgccagatgtacctaagtcgatggca
tggtgtaaagattcaatctgtgttggtttcaaaagggattattatctaataaaggtagat
gggaagggatcgattaaggaactatttcctacaggaaagcagcttgagccattagtagtc
ccattgatagatggcaaagttgttgtaggccaagatgatctaactgttgtgttgaatgaa
gaaggagtctgtacacagaaatgtgccttcaattggacagatatcccaacagccatggaa
catcagactccatacgtggtcgcagtattgccaagatatgtagagattcgtacgtttgag
ccccgtctcctggttcagagtattgaactacataagccacgcttcattacttctggaggt
cctaatattgtatatgtggccagcaatcattttgtttggcgcctcattccagtttccatt
gcaacccagattcagcagctcctccaagataaacagtttgaattggctttgcaattggcg
gatatgaaagatgattctgacaatgaaaaacagcaacagatccatcacattaagaatctt
tatgccttcaaccttttctgccaaaagcgctttgatgaatcaatgcaagtttttgctaaa
cttgggacagatcctacacatgtgataggtctctatcctgaattgttgcccggtgattac
aaaaaacagctccagtatccaaatgcagtgccaagtctctctgcagcggagctagaaaaa
gcacacctagcacttatagattacctaactcataaacgaagtcagttagtgaagaagcta
tatgattctgaccatcagtccactacatctcccctcatggagggaactcctaccataaaa
tccaaaaagaaattgatacagataattgatactacactgttgaaatgcttcctccataca
aatgtagccttagtggcaccattattgagactggagaacaatcattgccatattgaggaa
agtgagcatgtgctcaagaaagctcataaatacagtgaattaatcatactatatgaaaag
aaaggtctccacgaaaaggccttgcaggtgctagtggatcagtccaagaaagctaattct
cctttgaagggtcatgaaagaactgttcagtatttacaacatttgggaacagagaacttg
aatttaatattttcctattcagtttgggtacttagggattttcctgaagatggattaaaa
atatttacagaagatcttcctgaagtagaatccctgccacgaaaaaagattctgaacttc
ttgttagagaattttaaaaacctcgccattccttacttggagcatgtaattgatatctgg
aatgagattggttcggagtttcacaattgtctgattcagctctactgtgagaaagtacaa
ggcctaatgaaggaatatctcacttctttccctccagatgaaacaccagtgccagctgga
gaggaagagggggaacttggagagtaccgaaaaaagcttctttccttccttgagagttcc
aattattacaatgctgagcaactcatcagtgactttccctttgatggtctcctagaagaa
cgtgcactgctcttgggacgcatgggaaatcacgagcaagctctatttatatatgttcac
atcctaaaggacaccaagatagctgaaaattactgtcacaaacactatgaccgaaacaaa
gatggcagtaaagatgtatacttgtctctgctccgaatgtatctttcaccacctagtgtt
cattgcttgggaccaatcaagatggaactcttagagccacaagcgaatcttcaagctgca
ttgcaggttttggaacttcatcacagcaaattggacactactaaagcaataaatctcctt
ccagccaatactcaaattagtgagatacgaatattcttggaaaaagtccttgaagaaaat
gcccaaaagaagcgattcaatcagatacttaaaaagcttctccatgctgaattcttgcga
gtacaggaagaacggattttacatcagcaggtgaaatgcataatcacagaagaaaaagtt
tgtggtgtgtgtaaaaagaagattggaaatagtgcctttgcccggtttcctaatgcagtt
gttgtgcattatttctgctccaaagatgttggctcaatggatacctga
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integrated database retrieval system
