Thamnophis sirtalis (common garter snake): 106547928
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Entry
106547928 CDS
T06107
Symbol
AMFR
Name
(RefSeq) E3 ubiquitin-protein ligase AMFR
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04137
Mitophagy - animal
tsr04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
106547928 (AMFR)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
106547928 (AMFR)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tsr04121
]
106547928 (AMFR)
Enzymes [BR:
tsr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
106547928 (AMFR)
Ubiquitin system [BR:
tsr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
106547928 (AMFR)
Multi subunit type E3
ERAD complex
106547928 (AMFR)
LMBR1L-GP78-UBAC2 complex
106547928 (AMFR)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
G2BR
zf-RING_2
CUE
zf-C3HC4_2
zf-C3HC4
zf-RING_11
zf-C3HC4_3
zf-rbx1
zf-RING_UBOX
zf-ANAPC11
zf-RING_5
zf-RING_16
Prok-RING_4
zf-C3HC4_4
zf-RING_Vps41
SVIP
zf_RING_Vps8
Motif
Other DBs
NCBI-GeneID:
106547928
NCBI-ProteinID:
XP_013920679
UniProt:
A0A6I9XWV1
LinkDB
All DBs
Position
Unknown
AA seq
548 aa
AA seq
DB search
MLIAKLIQTIVFGPLRVSERQHLKDKFWNFIFYKFIFIFGVLNVQTVDEVVMWCLWFSGL
VFLHLMVQLCKDRFEYLSFSPTTPLNSHIRVLTLLVVMLLSCCGLAVVCGLIGYAHGMHT
LSFMAAESLLVTVRTVHVILRYIIHLWDLNHEGTWESKGTYVYYTDFIMELMLLSLDLMH
HIHMLLFGNIWLSMASLVIFMQLRYLFHEVQRRLRRHKNYLRVVGNMEARFAVATPEELA
SNNDDCAICWDSMQAARKLPCGHLFHNSCLRSWLEQDTSCPTCRMSLNIADNQQAPEDHP
RENLDENLPPVAAAEGRPHLNQHNHFFHFDGSRIASWLPSFSVEVMHTTNLLGIAQASNS
QLNAMAHQIQEMFPQVPYHLILQDLQLTRSVEITTDNILEGRIQVPFPTQRSDSIRPALN
NPIERQNTDQEDAEEDMETERIPLELSSRLEDTAEFNEMEAEAVETEDFEVRGSRFSKSA
DERQRMLLQRKEDLLQQARRRYLNKSFDDSTPDFSSQVEGPASDSITLRRRMLAAAAERR
LQKQHPSS
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgctgattgcaaagctaatacaaaccattgtgtttgggcccctccgtgttagtgaacgg
cagcatctgaaggataagttttggaacttcatcttctacaagtttattttcattttcggg
gtgttaaatgtccagaccgtggacgaagtcgtcatgtggtgcctctggttttcgggactt
gtgttcctacatctcatggttcagctttgcaaagacaggtttgaatatctctctttttct
cccaccacccctctgaacagccacattcgagtcctgaccctgctggttgtcatgttgctt
tcctgctgtgggctcgcagtggtgtgcggcctcattggctacgcgcatggaatgcacacg
ctatccttcatggctgcagagtccctgcttgtcaccgtaagaaccgtgcatgtgatttta
cgttacatcatccatctctgggatctgaatcacgaaggcacctgggagagcaaaggcacc
tatgtttattacaccgatttcatcatggagctgatgctgctgtccctggatttgatgcat
cacattcacatgctgctgtttggcaacatttggttgtcgatggccagtctggtgatcttt
atgcagctgcgttacctgttccatgaagttcagcgcagactgcggcgccataagaattac
ctgcgggtggttggaaacatggaagcaaggtttgcagtggcgactcctgaagaattggcc
tccaacaacgatgactgtgccatttgctgggattccatgcaggccgcccggaagctccct
tgcggccacctcttccataactcctgcttgcgctcctggctcgagcaagacacctcctgc
ccgacctgcaggatgtctctgaatattgcagacaaccagcaagctccggaggaccacccg
agagagaacctggatgaaaacttgccccccgtggcagcagctgaaggaagacctcatctc
aaccagcacaatcacttcttccactttgacgggtctcgcattgctagctggctcccaagc
ttttcagtcgaggtgatgcacaccaccaacctccttggaatcgctcaggccagcaactct
cagctcaatgccatggcccatcaaatccaggagatgttccctcaggttccttaccacctc
atcctccaggatctgcagctgacccgctcggtagaaataacaacggacaatattttagag
ggacgcatccaggtgcctttcccaacccagcgttctgacagtatccgaccagcattgaac
aatcctatagaaaggcagaataccgatcaagaagatgctgaagaggacatggagacggaa
aggatcccacttgagctcagctcaaggctggaagacacggcggagtttaatgaaatggaa
gctgaagcagtcgagacagaggacttcgaagtgagaggcagtcgcttttccaagtcagca
gatgagaggcagcggatgctgcttcagaggaaggaagacctgttgcaacaagcacgcagg
cgctaccttaacaaaagcttcgatgattccacaccggacttttcctcccaggtggaaggc
ccagcctccgactccatcacattacgacgcaggatgttggccgccgcagctgagcgaagg
ttacagaaacagcatccatcctcctaa
DBGET
integrated database retrieval system
