Thamnophis sirtalis (common garter snake): 106547932
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Entry
106547932 CDS
T06107
Symbol
SPG11
Name
(RefSeq) spatacsin isoform X1
KO
K19026
spatacsin
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsr03400
]
106547932 (SPG11)
DNA repair and recombination proteins [BR:
tsr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
106547932 (SPG11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
106547932
NCBI-ProteinID:
XP_013920684
UniProt:
A0A6I9XWV5
LinkDB
All DBs
Position
Unknown
AA seq
2276 aa
AA seq
DB search
MLSWIHNGLYSVLSISSLQVLSFKNGRAILLLNNFVIAHLIFPGGELGEEVEGCFRLDLP
PQTLERTVNVTFCRGILFLLDETGWIHIFGASDGAYLAHISVALYQSRGQEERKQDMPFP
LGQLSISYDLSTAVVVSHSSCVAAVDLNLYFREFPDHLFCKRSFENLSAQQLEGVDEDDL
NSSSYSMKFLQPSFQTDRSWKTHVLSLDDTRADNYFPHLCSDVELPWYQHLLHLEPMKSK
ALDTSAASLFQEVAFVLSSSRGKDNKSTEERRWKNVHLGDLEKRGSLDCKHVTGFHVLFT
ASSESEGLTLVLWDLVTQGITQSCVGKNSFFVEYTREEPLWLVLSETGLFLFLFGFTQEE
FLTRLIIYGSASTVDSLCCLNRWGRCSIPVHALEAGLENRQLDTVDFFLKNKENLFSLST
ASSLQDEPANIMSDFYLKSVEELRPALDLLCKAIQENDVETQSKHFSEQLLNLTLSFLNK
HLREIFTHREELDENMLQCVDIFTSYIIKLRTFMIRFPHKPSGAMSQPWDSEDNLPQMEQ
SHWEKFDSEQAVTEALLSNRVPEAQIFFRLTHNPAQDLGQLTWIGLEMAYKSLLKDDINE
ASRLLRNMGLSVKQQLHKICFYTTDYHVRDFLVSVLQDEDVLPETEKEMVDFVHEVENIY
SGTFQTQEKNAACCRSWRKEADCIDVTSLDSFLNCTQDRIHNREHRMMLNWAQGWNPSTR
ERILLPARAQEGEFQFCNPEALWMYLSSWHDWENIRWWISDSQLEGSPAKWPPLPLEAIG
QSALCSPYLRNEVLDTLARNGTFVPAELEDFEGLLQRTACAGGVMQEPHPLPDYVSAGGL
DFHTCFVLYCLERGLDHLLYSYLDYYRLFSSDCLILNDTDLREAHPWFEFLVQCWDIANH
PGDTDRIFQASLANAQISIPSNQASVSTMLLEGRTLLALATTMFAGGGIDQMVQKGDGRE
KVDAQLFRMALAPYPKLRAALFPQTTPQGISPSDLSLYHLLQCLAPFDSTKLFGWQSANT
LAIPDICSDLPHFSCSALVSKHAIIEHLDFSYYLYHERPSFAFGAFLAQQLSKSNRPKEL
VQQVAKEASSVALSLFYAPSLAATSVCFLEMLGLSSLELRVDIKAANVILRFMSRREEPQ
HHSIRQSLVEKLGELADGEKAAAEDLLVCLEEAVWDKVDHQEIKKTSSEARNHWSLVIQF
CQLHHIKLSTSYLRACARSKEWLQFVTEAQMYSYQPAEVIPLLRDFPLPLQDHLELALGH
LQPPRQGGLQGKEQKSQGLFQVLLQSQEQPCPWRHLLAASVKHHLPVLSVLAAGFQDASL
LPCLCVWIITSLDSSAASEVIGHIEGRAETHQWGLPDLALLWQWLLKRQKARILLHGFQL
FLEDSPLLIMLEVYELCMDYKNYTQAKIKLLTFQDNLSKLQAQGELPVLPGPWLEMQASF
LLDLMLHQCRTEYEFRKLLQLLADAGTALLHGPDLKKLSALGAILKDSPTCISRTLLRSY
SCEGFREECRRILEQLQESSSFSVARRVAELAALPVDNVVIQEVLQNLLLLKQVGHWTQK
RTRVEFWKKCHETYVQNAISNQAASGFFSAQADLVSEGLEDERAPSISERQLLLTLAGYW
LARSDPVPVGDLERIEREIWRCRIRRQGQMEARGSPQISISSEPSFDSLAKEFCFSKVAA
LNTPKFLELRAFPSQDATPVGLSEAEVASLAFLIGRLLDEGSVHEVARVCRYFSFYSRDV
ALILHCRTLALGEEAQGCFHPQIQALLAAEDSQRRREAAAEKKRLSSSSLDSWSSMGGSS
PDSGVVGSLRTLVAECVHGRNYCRQTLYLYQLSKELGCSFSEIAVHDSEKLLQAILSSQQ
PDWYKKAQAFITNQGLEPGAVAELVAEEITRELLEPLEGRGKQTPALNPAEESQRFLQLA
KLCQDHTLVGLKLLEKVSSVPHGELACTVELLILAHNCFSLTCHMEGITRVLQASRLLTD
DHLAPEEEFGLVVRLLTGIGRYSEMTYIFDLLHEKHYFEVLMRKKLDPNGTLKTALLDYM
KRCRPGDSEKHNMIALCFSMCREIGENHEAAANVQLKLIESQPWAESLQDVPSLKKLLMK
ALTLFLDATESYSKDFCVCQSLRCKRLTRLITLQLHFLASPHKTQLINLRRESLLPCILA
LPRFYQAAVVAEAYDFTPDWSEVLYQQVILKGDFNYLEEYKQHELLRTGTFEEITHKVKQ
QAANESAVRNLKQLLTHCEDIYVYYKLAYDNQFYDVVHLLLNDAQTGCCLNDLLAN
NT seq
6831 nt
NT seq
+upstream
nt +downstream
nt
atgctgagttggattcataatggcttatatagcgtactatctatttcctccttgcaagtg
ctgtcatttaaaaatggcagagctatactgttgctcaacaattttgtgattgcacatctg
atttttcctggaggagaactgggggaagaggtggaaggctgctttagacttgatttgccc
ccacaaactttggaaaggacagtgaatgttactttctgcagaggtatcctcttcttgctg
gatgagaccggatggatacatatatttggcgctagcgatggtgcctatttggcccacatc
agtgtcgctctctatcagtcacgggggcaagaagagaggaagcaggacatgccgtttcct
cttgggcagctgagtatatcatacgatctcagcaccgctgtggttgtcagccactccagt
tgtgtggctgctgttgacctcaacttgtacttcagagaattccctgaccatttgttttgc
aagcgaagctttgaaaatctttctgcgcaacagttggagggagtggatgaagatgacctc
aatagttcaagttacagcatgaagttcttgcaaccttcattccagactgacagatcctgg
aagacacacgtactatctctggatgatacacgcgcagacaattattttccacatttgtgt
tcagatgttgagttgccttggtatcagcatcttctgcacttagagccaatgaagtctaag
gctttggacacttctgcagcgtccctctttcaagaggttgcatttgttctttcaagctcc
agagggaaagataataaaagcactgaagagaggcgatggaagaatgtacatttgggtgac
ctagaaaaacgtgggagtcttgattgtaaacacgtgactggttttcacgtgctcttcact
gcctcaagtgaaagtgaaggactgactctggtcctgtgggatttggtgacacagggcatc
acgcagtcttgtgtggggaaaaactcctttttcgtggaatataccagggaggaaccgcta
tggctcgtcctttcagagactggcctctttttgttcctgtttggctttacccaagaggaa
ttcttgaccaggctgatcatctacggaagcgccagcactgtagactccctttgctgcctc
aataggtgggggaggtgttcgattcctgtacatgccttagaggctggcttagagaaccga
cagttggacactgtggattttttcctaaagaataaagagaaccttttcagtctgtctaca
gcaagctctctacaggatgaacctgcaaatattatgtcagacttttacttgaagagtgtt
gaagaactgaggccagcattggatttactgtgtaaggcaattcaagaaaatgatgtggaa
acccagagcaagcatttctctgagcagctgttgaacctcaccttatcttttcttaacaaa
catctccgtgagatttttacccacagagaagaattggatgaaaatatgctgcagtgtgtt
gacattttcaccagctacatcattaaactcaggacatttatgatcaggtttcctcataag
ccatccggtgccatgagccagccctgggattctgaagacaacctaccccaaatggagcag
agccactgggaaaaatttgattcagagcaagctgttactgaagcccttctaagcaacaga
gtgccagaggcacaaatctttttccgtctgactcacaaccctgcccaggatcttgggcag
ctaacctggataggtctggagatggcctacaaaagcctcctgaaggatgacataaatgaa
gcttccagacttttaaggaacatgggcctcagtgtgaagcagcaactgcacaaaatatgt
ttctacacaactgattaccatgtccgggactttctagtgagcgtgctacaagatgaagat
gttcttcctgaaacagagaaggaaatggtagactttgtgcatgaggtagaaaatatttat
tcaggcaccttccaaacacaggaaaagaatgcagcctgttgcagatcttggagaaaagaa
gcagactgtatcgatgttacttctttggattcctttctgaattgcactcaagacagaatt
cataaccgggaacacaggatgatgctaaactgggctcaggggtggaatccatccacacgg
gaaaggatccttctccccgcgagagctcaggaaggggaatttcagttctgtaatcctgag
gctctctggatgtatttgtcgtcttggcacgattgggagaatatcagatggtggatttct
gattctcaactcgaaggcagccctgcaaaatggccccccctccctttagaagccatcggt
caaagtgccttatgcagcccctacttgcgcaatgaagtcttggacaccctagctagaaac
gggacttttgtgcccgcagaactggaagactttgaaggcctcctgcagaggacggcttgt
gccggaggggtgatgcaggagccccatcctctcccggactacgtctctgcaggcggctta
gatttccacacctgctttgtcctctactgcttagaacgggggttggaccatctcctctac
tcctacttggattactatcgtttattttcatcagactgtctcattttgaacgatacagac
ctgcgtgaagcacacccttggtttgaatttttagtgcaatgttgggacattgccaaccat
cctggagatacagacaggattttccaggctagcctagccaatgcccagatctccattccc
agcaaccaggccagtgtgagcaccatgctgctggagggacgcactctccttgccctggct
accaccatgttcgccgggggagggattgaccagatggtccagaagggagatggaagagag
aaggtggatgcgcagctcttcaggatggcacttgctccttaccccaagctcagagctgcc
ctcttccctcagaccactcctcaaggaatctccccttccgacctttctctctatcacctt
cttcagtgcttagctccatttgattccaccaagttgtttggctggcagtcggcaaatacc
ctggccattcctgatatttgcagtgacctgcctcacttctcatgctcggctctagtaagc
aagcatgccatcatcgagcatcttgacttctcctactacttgtatcacgagcgcccttcg
tttgccttcggagcgtttttagctcagcagctgtcaaagagcaaccgcccaaaggagctg
gttcagcaggtggctaaggaagcctcctccgtggccctctccctgttctatgccccttct
ctcgctgccacctccgtctgcttcttggaaatgctgggcctgtcgagtctggaactccga
gtggacattaaagccgccaacgtgattttgcgcttcatgtccaggagggaggagccacag
caccactccatccggcagtccttggttgaaaagctaggagagctggccgatggagaaaaa
gcggcagctgaagatcttctggtctgcttagaggaagccgtctgggataaggttgaccat
caagagattaaaaagacctcgagcgaggcgaggaatcactggtccttggtcatccagttt
tgccagctgcaccatatcaagctgagcacgtcatacctgagggcctgtgcgcgttcgaaa
gaatggctgcaatttgtgactgaagcacaaatgtacagctaccagccggcggaggtgatc
cctctcctccgggacttccccctgcccctgcaggaccacttggaattggccctggggcac
ttgcagcctccaaggcaggggggcttgcaggggaaggagcagaagtcgcagggcctgttc
caggtcctgctccagagccaggagcagccgtgcccttggcgacacctcttggctgcctcg
gtgaagcaccacttgcccgtcctgagcgtgctggctgctggcttccaggacgccagcctc
ctcccctgtctctgtgtttggataataacttccctggacagttctgccgccagtgaggtg
atcgggcacattgaaggcagggctgaaacccaccagtggggcctcccggacttggccctc
ctctggcagtggctgctgaagaggcagaaggccaggatcctccttcacggcttccagctc
ttcctggaggactcccctctgctgataatgctggaggtgtatgaattgtgcatggactac
aaaaattacacccaagccaagatcaaactgctcacgtttcaagacaacctttcaaaactt
caagcccagggcgagctgcccgtcctccctgggccctggctggagatgcaggcctccttc
ctactcgacctgatgctgcaccagtgcaggacagagtacgaattcagaaaactcctccag
ctgcttgcagatgcaggaactgctcttctccatggaccagacctgaagaagctcagtgcc
ctcggtgccatcctgaaagattcacccacctgcatcagccggactctgctgaggagctac
agctgtgaggggttccgggaggagtgccggaggatcctggagcagctgcaggagagcagc
tctttctctgtggctcgcagggtagcagagctggcagcactgccagtggacaacgttgtc
attcaggaggtgctccagaacctcctcctcttgaaacaggttggccactggactcaaaaa
cggacaagagttgagttctggaaaaagtgccacgagacctacgtgcaaaacgccatctcg
aatcaagcagcctccggcttcttctcagcccaggcagacttggtctcggagggcctggag
gatgagagggcacccagcatctcagagaggcaactcctgcttacgctggctggatactgg
ctggccagaagcgacccggttcctgtgggtgatctggagaggatagagagggaaatttgg
cggtgccgcatcaggcgacaagggcagatggaggccagaggttctccccagatttccatc
agcagcgagccgtccttcgactccttggccaaggaattctgcttttctaaggtcgctgct
ttaaacaccccgaagttcctggagctcagagctttcccttcccaggatgcgaccccagtc
gggctttctgaagctgaagtggcgtccctggctttcctgattgggcgtcttctggatgaa
ggaagcgtgcatgaagttgccagggtttgccgctatttcagcttctacagcagagacgtc
gccctgattttgcactgccgcacgctggccttgggggaggaggcccagggctgcttccac
ccccagatccaggctctcctggcagctgaggacagccagaggcgcagggaagcggcagcg
gagaagaaacggttgagttcttcaagcctcgattcctggtcctccatggggggctcctct
ccggatagcggagttgtcggcagcctgcgtactttagttgccgaatgtgtgcatggtcgg
aattactgccggcagaccctctacctttaccaactctccaaagagctgggctgctccttc
agtgagatcgccgtccacgattcagagaagctgctccaggcaatcctgtcctcccagcag
ccagactggtacaagaaggcccaggccttcatcaccaaccaggggctggagccaggggcc
gtggctgagctggtggcagaggaaatcacacgggagctgctggagcctttggaaggaaga
ggcaagcaaactccggccctgaaccctgcggaggagagccagaggttcctgcaactggcc
aagctttgccaggaccacacactggtcggcctgaagctgctggagaaggtttcctctgtg
ccccacggggaacttgcctgcaccgtggagctcctgattctggcccacaactgcttcagc
ttgacgtgtcacatggagggcatcacccgtgtcctccaagcttcccggctgctcacggac
gatcacttggcaccagaggaagagttcggcctcgtggttcgccttctcaccgggattggc
agatacagtgagatgacctacatcttcgacctgctgcatgaaaagcattactttgaggtg
ctgatgagaaagaagttggacccgaacgggaccctgaagacggctctgctggactacatg
aagcgctgccggccgggagacagtgagaagcacaacatgattgccctctgcttcagcatg
tgccgggagatcggggagaaccacgaggcagcagccaacgtccagctgaagctcattgaa
tctcagccatgggccgagagtcttcaggatgtgccaagcttgaagaagctcctgatgaaa
gctctgaccctcttcctagatgccaccgagagctactccaaggacttctgcgtgtgccag
tccttgcgctgcaagaggttgaccaggctcatcaccctgcagctccacttcctggcttct
ccgcacaagacccagctgatcaacctgaggcgggagagcttgctgccctgcatcctggcc
ctgcccaggttctaccaggcagctgtggtggccgaggcctatgacttcactccagactgg
tcagaggtgctctatcagcaggtcatcctgaagggcgacttcaactatctggaggagtac
aagcaacatgagctgctcaggactggcacattcgaagagatcacccacaaagtcaagcag
caggcagcaaatgagtctgctgtgaggaacctgaagcagctcttgacccactgtgaggac
atttatgtctattacaagctcgcctatgacaaccagttctacgatgtggtccacttgctc
ttgaatgacgcccaaacaggctgctgtctcaacgatttactggccaattag
DBGET
integrated database retrieval system
