Thamnophis sirtalis (common garter snake): 106548027
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Entry
106548027 CDS
T06107
Symbol
NUP54
Name
(RefSeq) nucleoporin p54
KO
K14308
nuclear pore complex protein Nup54
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106548027 (NUP54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106548027 (NUP54)
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
106548027 (NUP54)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup54
Nup54_C
Motif
Other DBs
NCBI-GeneID:
106548027
NCBI-ProteinID:
XP_013920807
UniProt:
A0A6I9Y1K9
LinkDB
All DBs
Position
Unknown
AA seq
551 aa
AA seq
DB search
MAFNFGAAAGGAAAPNPAGFGGLEAANSTATGFNFGGFGLTANPAVNFNIGNFGVSTTSA
PPFNFGNSLASAGAFGGFGTANTTAGSTFSFSTPTNTGLFGATQNKGFGFGTTFGTAPTT
GTGLGTLGTGLGFGGFNTQQQPTLGGLFSQPAQAPSQSNQLINTASALSAPSLLGDERDA
ILAKWNQLQAFWGTGKGYFNNNIAPVEFTQENPFCRFKAVGYSCMSNNKDEDGLVALVFN
KKENEIRGLQQQLVESLHKILGSNQTLSVNVEGLKTLPDDQTEIVIYVVERSPNGTSRRV
PATTLYAHFEQANIKTQLQQLGVTLSMARTELSPAQVKQLLQHPPAGVDPIIWEQAKVDN
PEPEKLIPVPMVGFKELLRRLKVQDQMTKQHQSRLDIISEDISELQKNQTTTMAKIAQYK
RKLMDLSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQLDTIQCELNAPTQFKGRLNELMS
QIRMQNHFGAVRSEERYYIDADLLREIKQHLKQQQEGLSHLISIIKDDLEDAKLIEHGLN
ENIPVRGGVFS
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atggctttcaacttcggggcggctgctggcggcgcggccgccccaaaccccgcgggattt
ggtgggcttgaagcagcaaattccactgccactgggtttaattttggggggtttggatta
actgccaaccctgcagtgaattttaacattgggaattttggtgtctccactacttcggcg
ccaccgtttaattttggtaacagtctggccagcgcaggagcttttggggggtttgggacc
gccaacaccaccgcggggtccaccttcagtttctcaactcctacaaatacagggttgttt
ggagctacccagaacaaaggtttcggtttcggtaccacctttggaacagccccaactaca
ggaactgggcttggcactttgggaaccggtttgggctttggtggtttcaacactcagcag
caaccaacacttggaggcctcttcagccagcctgctcaagccccttcacagtccaaccag
ctgatcaatacagcgagcgcgctttccgccccgagcctcttgggggatgagcgagatgcc
attttggccaagtggaatcagctgcaggcattttggggcacaggcaaagggtatttcaac
aacaacattgcccccgtggaatttacgcaggagaacccgttctgcagatttaaggccgtg
ggctacagctgcatgtccaacaacaaggacgaagatggcttggtggccctagtcttcaat
aaaaaggaaaacgagatccgtggtctgcagcagcaactggtggaatcgttgcacaaaatc
ttgggttcaaaccagacgctcagtgtcaacgtggaaggtttaaagacactgcctgatgac
caaacagaaatagtgatctacgtggttgaacggtcacccaacgggacttccaggcgggtt
ccagccaccaccctgtatgcgcacttcgaacaagccaacatcaaaacccagttgcagcag
cttggcgtgaccctcagcatggccaggaccgagctctccccagcccaggttaagcagttg
ctgcaacatcctcctgcaggtgttgatcctatcatttgggaacaggccaaagtggacaac
cccgaacctgaaaagctgattccagtcccaatggttggcttcaaggaactcttgaggagg
ttgaaagttcaagaccaaatgacaaagcagcatcagagccgactggatattatatcagaa
gatataagtgagcttcaaaaaaaccagactaccactatggccaaaatcgctcagtacaag
agaaagctaatggatctttcccatcgaactttgcaggtgttaatcaagcaagagatccag
aggaaaagcgggtatgccatccaagcggacgaggagcaactccgcgtgcagctggatacg
attcagtgcgagctcaacgcccctacccagttcaagggtcggctgaatgagctgatgtca
cagatccgaatgcagaaccactttggagctgtcagatccgaagagagatactatatcgac
gcagacctcttacgggaaatcaaacagcatttgaagcagcagcaagaaggattgagtcac
ctgatcagtattataaaagatgaccttgaagacgcaaagctgatagaacatggcttgaat
gagaacattccagttagagggggcgtcttcagttga
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