Thamnophis sirtalis (common garter snake): 106548160
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Entry
106548160 CDS
T06107
Symbol
IGHMBP2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tsr03009
]
106548160 (IGHMBP2)
03012 Translation factors [BR:
tsr03012
]
106548160 (IGHMBP2)
Enzymes [BR:
tsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106548160 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
106548160 (IGHMBP2)
Ribosome biogenesis [BR:
tsr03009
]
Eukaryotic type
Other ribosome biogenesis factors
106548160 (IGHMBP2)
Translation factors [BR:
tsr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
106548160 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_19
AAA_30
zf-AN1
ResIII
Helicase_RecD
Viral_helicase1
DEAD
nSTAND3
AAA_16
AAA_22
Flavi_DEAD
SLFN-g3_helicase
UvrD-helicase
IstB_IS21
AAA
AAA_25
DnaB_C
PhoH
NTPase_1
AAA_33
RL
DAP3
ABC_tran
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
106548160
NCBI-ProteinID:
XP_013920956
UniProt:
A0A6I9Y2U4
LinkDB
All DBs
Position
Unknown
AA seq
985 aa
AA seq
DB search
MAALVEEFVSRQMELLKEEREAEISEARAWQEGISLKELQRRGVCLLKLELHCQKTGLYG
HLLVTLQPQKRGLDTELPSNSFGPGDIVGLYEAAGQNNQICTGIVTRIASNSITIAVDEP
QSNLVSLDQENLYRLLKLANDVTYNRLKRALNTLNHYGSGPASDLIDVLLCSSEPSDASD
TKLLKFYNESLDASQKEAVCFSLAQKELAIIHGPPGTGKTTTVVEIILQAVEQGLKVLCC
APSNIAVDNLVERLSDHKVRILRLGRPARLLESVQHHSLDAVLSRGDNAQIVADIRKDID
QAFMKTRKTQDKGERKHFFNEIKILRKELKEREEMAMSETLQKAHVILATNTGASSDGPL
KLLPENHFDLVVIDECAQALEASCWIPLLKVRKCILAGDHKQLPPTIISHKAAAQGLSLS
LMERLIQKCGDRVVKMLTVQYRMHQAIMQWASTEMYDGRLSAHCSVAQHLLKDLPGVAPT
EETSIPLLLIDTDGCDLFELEVEEEQSRGNPGEVQLTGLHIDALIEAGVKAKDVAVIAPY
NLQVDMLRKHLYQKYPDLEIKSVDGFQGREKEAVVLSFVRSNRKGEVGFLAEDRRINVAI
TRARRHVAVICDSRTVSNHNFLKRLVEYMSTHGEVRTAFEYLDDIVPGNYTPKSSLSPRD
QEKRLKCSIDPLPKTLGEKRKGRPTQKPREGLTECSLESRGKVTTSETKENENSLKHKAR
ILEFLDSGEVQLDFPSSLNAHDRMLIHQLAEEYGLQHVSTGEGSARHISICRRDSPAELS
LGDTVVCQPELIQACPKEVDAGGEERERGAGPGATDLKTLHMQRMEREREKKEERVKQSQ
EANVNLQEIIGKKEKNVGGKASSKSKKEIAAEEDFDAMISAAIKADNTCGFSKCKASVTT
LGQLCQHCNRRYCLSHHIPEVHGCGEKAKANARQRISKEGILYPGSGMKDKSLDPTKRAH
LQRRLDQKLSELSKQRKSKRKDREK
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atggcggcattggtggaagagtttgtgtcccgacaaatggagttgctaaaggaggaaaga
gaggccgaaatttcggaagcaagagcatggcaagaaggaatctccctgaaagagttgcag
cgtagaggagtttgcttactgaaactcgaactgcattgtcaaaaaactgggctatatggc
catctgcttgtaactttacagccacaaaaacgtggcttagacacagagttaccttccaat
agttttggacctggtgacatagtgggactttatgaagcagctggacaaaataatcagatc
tgcacaggaattgtaacccgaatagcctccaattcaataactattgcagttgatgagcct
caaagtaaccttgtgagtttagatcaggagaatttataccgtctgttgaaacttgccaat
gatgttacatacaacagactcaaaagggctttaaatacacttaatcactatgggtctggt
ccagcatctgatcttattgatgtgctgttgtgttcttctgaacctagtgatgccagtgat
acaaagcttttgaagttctacaatgaatccctggatgcctctcagaaggaggctgtttgc
ttttcactggcacagaaggaacttgctatcatccatggaccacctggaactggcaagacg
acaactgtggtggagataatactccaagctgtggagcaaggcttgaaagttctctgttgc
gctccctctaacattgcagtcgataacttggtggaaaggctctctgatcataaggtgcgg
atcctgcgtctgggtcgcccagctcgtctcctggagtctgtacagcaccattcactggat
gctgtcctgtcgcgtggagataatgcccagattgtagccgatatcaggaaggatattgat
caagcatttatgaaaacaaggaagacccaagacaaaggagagagaaaacatttttttaat
gaaattaagatactgagaaaggaactgaaggaacgagaagaaatggctatgtctgaaact
ttgcaaaaagctcacgttattcttgctacaaacacaggtgcttcttctgatggtccgttg
aagcttcttcctgagaaccactttgatcttgtggtgattgatgaatgtgctcaagctctt
gaagcaagctgttggattccactgctgaaggttaggaagtgtatcctggctggtgatcac
aaacagctgcctcccacaatcatctctcacaaggctgccgcacaaggtctttctcttagc
ttaatggaacggctgattcagaaatgtggggaccgtgttgtgaagatgctcactgtgcag
taccgaatgcaccaagccataatgcaatgggcttccactgagatgtatgacggtcgtctc
tcagctcactgttctgtcgcacaacatttactgaaagacttgccaggagtggcccccaca
gaagagaccagtatcccattgctgcttatagatacagatggttgtgacttatttgaactt
gaagtggaagaagaacaatctagaggaaacccaggtgaggtgcagcttactggtttgcat
atagatgctttgatagaagctggtgtgaaagccaaagatgtagctgtcattgctccttac
aatcttcaggtggacatgctaagaaaacatctgtatcagaagtatccagatctggagatt
aaatcagtggatggcttccaaggaagagaaaaggaggcagttgttctttcttttgtaaga
tccaatagaaaaggtgaagtgggattcctcgccgaagacaggagaataaatgttgcaatt
acacgggcccgacgtcatgtggctgtaatctgtgactctcgcaccgttagcaaccataat
tttcttaaacggctggtggagtatatgagcacccacggagaagtgcgcacagcctttgaa
tacctggatgatattgtacccggaaattacactcccaagagttctttgagtccccgtgac
caggaaaagagacttaaatgcagcattgatccactcccaaagactcttggagagaaacga
aaaggaagacctacccaaaagcctagagaggggctaacagaatgttctctggaaagcagg
ggcaaagtcacaacatcagaaaccaaagagaatgaaaactcacttaaacataaagcaaga
atattggagtttctggatagtggtgaggtccaactggatttcccttcctctttaaatgct
cacgatagaatgcttatccatcagttggctgaagaatacgggctgcagcatgtgagcaca
ggagaaggcagcgcacgacacataagtatttgtaggagagattctcctgcagaattatct
ttgggagatactgtggtttgtcaacctgaattaattcaggcctgtccaaaagaagtagat
gcaggcggtgaagagagggagaggggtgctggcccgggggccacagatctaaaaacgttg
cacatgcaacggatggaaagagagagagagaagaaagaagagagagtgaaacaaagccaa
gaagccaatgtaaatcttcaggaaataattgggaagaaagaaaaaaatgttggaggaaag
gcatccagtaaatccaaaaaggaaattgcagctgaggaagattttgatgctatgatctct
gcggcaattaaagcagacaacacatgtggtttctccaaatgcaaagccagcgtaacaacc
ctgggacagctctgccagcattgcaacagacgctactgtctcagccaccatatcccagag
gttcacggatgcggggagaaagccaaagcaaatgcccggcagagaatcagcaaggaaggg
attctctatcctgggagtgggatgaaggacaagtccttggatcctaccaagagagctcac
ctccagagacgcttggaccagaaactcagcgaactgtccaagcagcgaaagagcaaaagg
aaagatagagagaaataa
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