Thamnophis sirtalis (common garter snake): 106548190
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Entry
106548190 CDS
T06107
Symbol
NPC1
Name
(RefSeq) Niemann-Pick C1 protein isoform X1
KO
K12385
Niemann-Pick C1 protein
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
tsr04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
106548190 (NPC1)
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
106548190 (NPC1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tsr02000
]
106548190 (NPC1)
Transporters [BR:
tsr02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
106548190 (NPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NPC1_MLD
NPC1_N
Sterol-sensing
Patched
MMPL
ACR_tran
Motif
Other DBs
NCBI-GeneID:
106548190
NCBI-ProteinID:
XP_013920997
UniProt:
A0A6I9Y1Y5
LinkDB
All DBs
Position
Unknown
AA seq
1291 aa
AA seq
DB search
MRDQLRLRGRSCGRLCGLAVSVVLLLALLPGRAFSGSCIWYGECEISSGDKRYNCQYNGS
AIPLPKDGYDLVQELCPGFFFENVSLCCDVQQLKTLKSNLELPLQFLSRCPSCFHNLMNL
FCELTCGPHQSEFLNITQTKPYQDPVTKENKTNIIELQYYIGKIFANDMYNACKDVEAPS
SNIKALGLLCGKDVKDCNATNWIQYMFSKDNGQAPFNMIPIFSDVPIHGMIPMNNATKGC
NESMDDITGPCSCQDCSIVCGPKPEPPPPPAPWLLLGLDAMCVIMWISYTAFLLIFFAVV
CGIWCYRKRYFVSEYTPIDGNIAYSVNSHQNTGEVTWCERFGEKFENILRVTFTSWGAFC
VRNPRPVILFSLIIIAMCSSGLAFLKITTNPVDLWSAPNSQARREKEYFDNNFGPFFRTE
QIIIQAVNTTPEMYKPYLPGPDVPFGPPLTKHILHQILDLQNGVENLTASYQNETVMLKD
ICLAPLAPYNNNCTILSVLNYFQNSHSRLDANISDEFYTYADFHSHFLYCVRAPASLNDT
GLLHEPCLGTFGGPVFPWLVMGGYDNENYNNATALVITFPVINYQNGTEKMMKVLAWEKE
FINFVKNYNNPNLRISYSAERSIEDEINRESNSDVHTIVISYAVMFVYISIALGHIKSVA
RVLVDSKISLGIAGILIVLSSVACSLGIFSYCGVPLTLIVIEVIPFLVLAVGVDNIFIIV
QTFQRDERLQDETLDKQIGRILGEVAPSMLLSSFSEAVAFFLGSLSTMPAVRTFSLFAAV
AVFIDFLLQITCFVSLLGLDVKRQESNRCDILCCIKGHEEISSFHHSKSMLFQFFKNIYS
PFLLKEWMRPIIISIFVGVLSFSIAVVNKVEIGLDQRLSMPDDSYLIVYFNDLGKYLHAG
PPVYFVLKEGHDYTTPDGQNMVCGGMGCDNNSLVQQVFDAAEISSYTRIGYSPSSWIDDY
FDWIKPQSSCCRTYNTTGAFCNASVINPSCVRCRPMTKEGKQRPEGEDFMKFLPMFLSDN
PNPKCGKGGHAAYSSAVNFIHNSSEIGATYFMTYHTVLKTSADFIDALKKARIITNNITA
AMVHKEKNAEVFPYSLFYVFYEQYLTIVDDTIFNLGISLGSIFIVTMVLLGFEIWAAVIV
SLTIAMILVNMFGVMWLWGISLNAVSLVNLVMSCGIAVEFCSHVTRAFTISTKATRVERA
EEALSQMGSCVFSGITLTKFGGIVVLAFSKSQIFQVFYFRMYLAMVLLGATHGLIFLPVL
LSYIGPSINKAKVRAAQERNKGTEREKLLFF
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgatcagcttaggctacggggccgcagctgtgggaggctctgcggcctggccgtc
tctgtcgtcttgttactggcgcttctgcccggccgggcattctcaggctcttgcatatgg
tatggcgaatgtgaaatttcttctggagacaaaaggtataactgtcaatataatggttca
gcaataccactaccaaaggatgggtatgatttagtgcaggaactctgtccaggttttttc
tttgagaatgttagcctttgctgtgacgtacagcaacttaagactttgaaaagtaatctg
gagctacctttacagtttctttccaggtgtccatcatgctttcataatttaatgaatctg
ttttgtgagctaacctgtggccctcaccagtctgaatttttgaatattactcaaacaaag
ccatatcaagatccagttacaaaagagaacaaaaccaacatcatagagctgcaatattat
attggaaaaatttttgctaatgatatgtataatgcctgcaaagatgtggaggctccatca
agcaatattaaggcattaggtctgttgtgtgggaaagatgttaaagactgtaatgcaacc
aattggattcagtatatgtttagcaaagataatggccaggctcccttcaacatgattcca
atattttcagatgtacctatccatgggatgattcctatgaacaatgctaccaaaggctgc
aatgagtctatggatgatatcacaggaccttgtagttgtcaagattgttccattgtctgt
ggcccaaaaccagaaccaccaccacctcctgccccatggcttttgcttggtttagatgcc
atgtgtgttattatgtggatctcctacacagcatttcttcttattttctttgcagtggtt
tgtggcatctggtgttacaggaagagatattttgtttctgaatatacacccattgatggc
aatattgcatattctgttaactcacatcaaaatactggagaagttacttggtgtgaaaga
tttggtgagaaatttgagaatattttaagagttacatttacgtcatggggagctttttgt
gttcggaatccacgacctgttattctgttctccttgattatcattgccatgtgttcctca
ggcttggcatttctcaaaataactacaaatcctgtagatctgtggtcagccccaaatagc
caagcccggagagagaaggaatactttgataataattttggacctttcttccgtactgaa
caaatcattattcaggcagtaaataccactccagagatgtataagccatatcttccagga
ccagatgttccttttggacctccacttacaaaacatatcttgcatcagatactagatttg
caaaatggtgttgaaaacttaactgcatcttatcaaaatgaaactgtaatgttgaaagac
atttgcctggcacctcttgctccctacaataacaactgtactattctgagtgttctcaac
tacttccagaacagtcattctaggctagatgctaacatttctgatgaattctatacctat
gctgacttccactctcacttcttatactgtgtcagggctccagcatctctgaatgacaca
ggtctccttcatgaaccttgcttggggacatttggtggtcctgtcttcccatggctggtg
atgggaggatatgataatgaaaattataataatgccacagcacttgtgatcacatttcct
gtcataaattaccagaatggcacagaaaagatgatgaaagttttggcttgggaaaaggag
tttatcaattttgtgaaaaactataacaacccaaatttaagaatttcctactctgcagaa
cgtagtattgaagatgaaataaatcgagaaagcaacagtgatgttcatactattgtaatt
agctatgcagtcatgtttgtgtacatttccatagctcttggacatattaagagtgttgct
agagtcttggtggattcaaagatctcattgggtattgcaggcatcctgatagtgctaagt
tcagttgcatgttctttgggtatcttcagctattgtggagtccctctcacactaattgtt
attgaagtcattccctttttggtgttggctgttggagtggacaacattttcattattgtt
cagacatttcagagagatgaaaggcttcaagatgaaaccttagataagcagattggtcga
atccttggggaggtggctcctagtatgcttctttcctcattttctgaggctgtggctttt
ttcttagggagcttgtctactatgcctgcagttcgtacattctccctctttgctgctgtg
gctgtctttattgatttccttctgcaaattacttgctttgtaagtctcttgggcttggat
gttaagcgccaagagagtaatcgatgtgatatcctgtgctgtatcaaaggtcatgaagaa
atcagtagtttccatcattctaaaagcatgttgtttcaatttttcaaaaacatttattct
ccgtttcttcttaaagagtggatgagaccaattattatatctatatttgtgggtgtgtta
tcattcagcatagcagttgtcaacaaagttgagattggcctggaccagagattatcaatg
cctgatgattcctatttgatagtctacttcaatgatcttggcaaatacctgcacgcaggt
cctccagtatattttgtgttgaaagaaggccatgattatacaacgccagatggacaaaat
atggtctgtggaggaatgggatgtgacaacaattctctggtacagcaagtgtttgatgca
gcagagattagcagctatacaagaattggttattcaccttcttcctggattgatgactac
tttgactggatcaagccacaatcttcctgttgcagaacttataacaccactggagcattc
tgcaatgcttcagttatcaatccatcatgtgtgcgctgcaggccaatgactaaagaagga
aaacagagacctgagggtgaagacttcatgaaatttctccctatgttcctctcggataat
cctaatccgaaatgtggcaagggaggacacgctgcatatagttctgcagtcaactttata
cacaactcttctgaaattggagccacttacttcatgacttaccatacagtgctaaaaact
tcagcagactttattgatgcattgaaaaaagcacggattataacgaacaatattactgca
gccatggtccacaaagaaaaaaatgctgaagtttttccttacagcttgttctatgttttt
tatgaacaatatttaacaattgtggatgacaccatctttaatcttggcatttcccttgga
tcaatattcatagtaactatggtgctgcttggttttgaaatatgggctgccgttattgtt
tccctcactattgctatgatactggtcaacatgtttggagtgatgtggctctggggtatc
agtttaaatgcagtttccttagtaaaccttgtaatgagttgcggcatcgctgttgagttt
tgtagccatgtgacaagagcattcacaattagtacaaaagcaacaagagtagagcgtgct
gaagaagcactatcccaaatggggagctgtgttttcagtggtattacacttacaaaattt
ggaggaatagtggtgcttgctttttccaaatctcagattttccaagtcttctacttcagg
atgtatttagccatggtgctacttggagcaacccatggtctaatatttcttcctgtccta
cttagctacatagggccctcaataaataaagctaaagttcgtgcagcacaagaaaggaac
aaaggtacagaaagagaaaaactcctgttcttctag
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