Thamnophis sirtalis (common garter snake): 106548643
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Entry
106548643 CDS
T06107
Symbol
DHX36
Name
(RefSeq) ATP-dependent RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106548643 (DHX36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106548643 (DHX36)
03012 Translation factors [BR:
tsr03012
]
106548643 (DHX36)
Enzymes [BR:
tsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106548643 (DHX36)
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
106548643 (DHX36)
Translation factors [BR:
tsr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
106548643 (DHX36)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
Helicase_C
HA2_N
AAA_22
AAA_19
nSTAND3
ATPase
AAA_14
NPHP3_N
RsgA_GTPase
AAA_23
Ntox8
PhoH
Sir1
Motif
Other DBs
NCBI-GeneID:
106548643
NCBI-ProteinID:
XP_013921537
UniProt:
A0A6I9YBP0
LinkDB
All DBs
Position
Unknown
AA seq
906 aa
AA seq
DB search
MTVKYVLNVGDSSIYLWPLRFRYSMKSCAKEVPTKTKPVVENPVVEKAPEKRRPAVEKSF
LVQDSDYLLQENMPDSDLDEQFKEELRKKKSDSRYIEMQRFREKLPSHSMRKELVNLINN
SRVTVISGETGCGKTTQVTQFILDDYIERGKGSSCRIVCTQPRRISAISVAERVAAERAE
SCGNGKSTGYQIRLESRLPRRQGSILYCTTGIVLQWLQSDKQLSSVSHVILDEVHERNLQ
SDVLMAIIKDLLNVRLDLKIILMSATLNAEKFSDYFDGCPMIHIPGLAYPVKEYLLEDVI
EKLRYMPENTDRRPHWKKRFMQGHISRPEKEEKEEIYHEQWPDYVKQLKTRYSETTIDAL
GMIDDDKIDLDLIAALIRYIALEEEEGAILVFLPGWDNISTLHDLLVSQVMFKSDRFVII
PLHSLMPTVNQTQVFKKTPPGVRKIVIATNIAETSITIDDVVYVIDGGKIKETHFDTQNN
ISTMAAEWVSKANAKQRKGRAGRVQPGQCYHLYNGLRASLLDDYQLPEILRTPLEELCLQ
IKILKLGGIANFLMKLMDPPSHDAVVLSIKHLKELNALDRQEQLTPLGVHLARLPVEPHI
GKMILFGALFCCLDPVLTIAAGLSFKDPFVIPLGKEKLADARRKELSRNSKSDHLTVVNA
FKGWEEAQRRGFRYEKDYCWEYFLSPNTLKMLRNMKGQFAEHLLAAGFVNSRNPWDPKSN
INSENEKLLKAVICAGLYPKVAKIRANFSKKRKMVKVSTKTDGTVNIHPKSVNVEETEFH
YNWLVYHLKMRTSSIYLYDCTEVSPYCLLFFGGDISIQKDKDQDTIAVDEWIVFQSPART
AQLVKDLKKELDDLLQEKIENPQPVDWNNTKSRDTAVLTAIIDLITTQENETARNFAPHF
QNEQYN
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atgacggtgaagtatgtgttgaacgtgggagactcttcaatttatctctggcctttgagg
ttcagatattctatgaaaagctgtgcaaaggaggttcctactaaaacaaagcctgtggtg
gaaaatcctgttgtggagaaggctcctgaaaagagaaggccagcagtggaaaaatcattt
ctggttcaagattcagattatctcttacaagaaaatatgcctgatagtgacttagatgaa
caatttaaagaagaattgagaaagaaaaagtctgattcaagatatattgagatgcagaga
tttcgtgagaaattgccttcccacagtatgaggaaggagctcgtcaaccttataaataat
agtcgggtaactgtaataagtggtgagactggttgtggaaagacaacccaggtaacccag
ttcattttggatgactatattgaaagaggaaaaggatcttcttgcaggattgtgtgcact
cagcctaggagaatcagtgctatttctgtagcagaaagagttgcagcagaaagggccgaa
agctgtggtaatggaaaaagcactggctatcaaattcgccttgaaagccggttgccaagg
agacaaggttcaattttatactgcacaacaggaattgtcctgcaatggctccagtcagac
aaacaattgtccagtgtaagtcatgtaatccttgatgaagtccatgagagaaatcttcaa
tcagatgttttaatggcaataattaaagacctcctgaatgtacgactagatttgaaaata
attctgatgagtgctacactgaatgctgagaagttttcagattattttgacggttgtcct
atgatccatattcctggcttggcttatcctgtcaaggaataccttttggaagatgtaatt
gagaaattacggtacatgccagaaaatacagatcgcaggccacattggaaaaagagattt
atgcagggacatataagcagaccagaaaaggaagaaaaagaagaaatttatcatgaacaa
tggccagattatgtaaagcaattaaaaacacgatactcagaaactacaattgatgcactg
ggaatgatagatgatgataaaattgatcttgatttgatagcagcattaataagatatatt
gctcttgaagaagaggaaggcgcaattctagtatttcttcctggatgggataacattagc
acactgcatgatcttctggtttctcaagttatgtttaaatcagataggtttgtcatcata
cctttgcattcattaatgcctactgttaaccagactcaggtattcaaaaagacccctcct
ggtgttcgtaaaattgtaattgctacaaacattgctgagactagtatcaccatagatgat
gtagtttatgttatagatggagggaagataaaagaaactcattttgacacacagaataat
atcagcaccatggctgcagaatgggttagcaaagcaaatgccaagcaaagaaaagggaga
gcaggcagagttcaacctgggcagtgctaccacttatataatggtcttcgtgccagtctg
ctagatgattatcagttgcctgaaatcctgaggacacctttggaggaactgtgtttgcaa
atcaagattttgaaacttggaggtattgcaaattttttgatgaagctcatggatccacca
tcacatgatgctgtagtgctctccataaagcatctaaaggagttgaatgcattggacaga
caagaacagttgactccccttggtgtccacttggcacgattacctgtggagccacacatt
ggaaaaatgattctgtttggagccttattctgttgcttagatcctgttctcactattgca
gctggcctcagcttcaaggacccctttgtcattcccttgggtaaagaaaaattagcagat
gcaagaagaaaggaactctcaagaaattctaaaagtgatcacctgactgttgtgaatgct
ttcaagggttgggaagaagctcagcggcgtggcttcaggtatgagaaggattattgctgg
gagtactttctttctcccaataccctgaagatgctgcgaaacatgaaagggcaatttgca
gaacatctccttgcagctgggtttgtgaatagtaggaacccttgggatcccaaatccaac
attaactcagaaaatgagaagttactcaaagctgttatctgtgctggattatatccaaaa
gtggccaaaatccgagcaaacttcagcaaaaagagaaaaatggttaaagtttccaccaaa
acagatggaacagtgaatattcatcccaaatctgtgaatgttgaagaaacagaattccat
tacaactggctagtttatcacttgaaaatgaggacaagtagtatatacctgtatgactgt
acggaagtttcgccatattgtcttttgttttttggaggagatatttcaattcaaaaggac
aaagatcaggatacaatagctgtagatgaatggattgtttttcagtctccagcaagaaca
gcacagttagtaaaggatttgaaaaaagaattggatgaccttctgcaagagaaaatagaa
aatccacaacctgtggactggaacaatactaaatcaagggacactgcagtgttgacagct
attatagatttaatcactacacaagagaatgaaactgccagaaactttgcacctcatttc
caaaatgaacaatacaattaa
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