KEGG   Thamnophis sirtalis (common garter snake): 106548868
Entry
106548868         CDS       T06107                                 
Symbol
SMU1
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
tsr  Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:tsr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tsr03041]
    106548868 (SMU1)
Spliceosome [BR:tsr03041]
 Complex B
  Other components
   Complex B specific factors
    106548868 (SMU1)
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_TEP1_2nd WDR55 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_EML Beta-prop_WDR90_POC16_2nd WDR90_beta-prop_4th Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_Nup120_160 Beta-prop_NWD2_C Beta-prop_Vps41 Ge1_WD40 Beta-prop_HPS5 Beta-prop_NUP159_NUP214 Beta-prop_DCAF4 Beta-prop_IFT140_1st Beta-prop_SPT8 LisH_TPL Beta-prop_IFT122_1st Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_VPS8 Beta-prop_WDR75_2nd WD40_RFWD3 Beta-prop_EIPR1 Beta-prop_SCAP Beta-prop_BBS7 Beta-prop_IP5PC_F DUF7165 TFIIIC_delta VPS8_N Beta-prop_NOL10_N zf_topless
Other DBs
NCBI-GeneID: 106548868
NCBI-ProteinID: XP_013921831
UniProt: A0A6I9YCF0
LinkDB
Position
Unknown
AA seq 499 aa
MQYLKENSLHRALATLQEETTVSLNTVDSIESFVADINSGHWDTVLQAIQSLKLPDKTLI
DLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENLLARSYFDPREAYPD
GSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGLLPPGMTIDLFRGKAAVK
DVEEEKFPTQLSRHIKFGQKSHVECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKY
QAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLS
FSKDSSQILSAAFDQTIRIHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVK
VWNMKTTECCNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCNRSNTVVIMNMQGQIVRS
FSSGKREGGDFVCCALSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHP
HQNLIATYSEDGLLKLWKP
NT seq 1500 nt   +upstreamnt  +downstreamnt
atgcaatatctgaaggagaacagccttcatcgtgctctggctacattgcaagaggaaact
acagtgtctctgaatacggtggacagcattgagagctttgtggcggatattaatagtggc
cattgggatacagtactgcaggcaatacagtcactaaagttgccagacaaaacactcatt
gatctgtatgaacaggttgttctggaactgatagaacttcgtgaattgggtgctgctaga
tctcttctgagacagactgatccaatgatcatgttaaaacaaacccaaccagagcgatat
attcatcttgagaaccttttggctaggtcctattttgacccacgtgaggcatacccagat
ggaagcagcaaagagaagcggagagctgccattgcccaggctttggctggtgaagttagt
gtggtacctccatctcgtcttatggcgttattaggacaggccttaaaatggcagcagcat
caggggctacttccccctggtatgactatcgacttgttcagaggaaaagcagctgtcaaa
gatgtggaagaggaaaaattccccacgcagctgagtagacatattaagtttgggcaaaag
tctcatgtggaatgtgctcgattttctccggatggtcagtatctggttactggttctgtg
gatggatttattgaagtctggaactttactactgggaaaatcaggaaggatctgaaatac
caggcacaggataattttatgatgatggatgatgcagtgctgtgcatgtgtttcagcaga
gacactgaaatgttagcaactggagcacaagatggaaaaatcaaggtgtggaagattcag
agtgggcagtgtctgaggcgatttgaaagagcccatagcaaaggtgtcacctgtctgagc
ttctcaaaggacagcagtcagattctgagtgccgcctttgatcagacaatcaggattcat
ggcctgaaatcaggaaagactctcaaagaatttcgtggtcactcctcatttgttaatgaa
gctacatttacacaagatggacattatattattagtgcatcctctgatggcactgtgaag
gtttggaatatgaagactacagaatgctgtaacacgttcaaatccctgggtagcacagct
ggaacagacatcactgtgaacagtgtgattctcctgcctaaaaatccggagcactttgtt
gtttgtaacagatcaaatacagtggtcatcatgaacatgcaggggcaaattgtgaggagt
ttcagctctggtaagagagaaggtggtgacttcgtctgctgtgccctttctcctcgaggc
gagtggatctattgtgtgggtgaagattttgtcctctactgtttcagcacagtgactggc
aaactggagagaacactgacggttcatgaaaaggatgtcattggtattgctcaccatccc
catcagaatttgattgctacctatagtgaagatgggctgttgaagctgtggaaaccatag

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