Thamnophis sirtalis (common garter snake): 106549106
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Entry
106549106 CDS
T06107
Symbol
DDX1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tsr03041
]
106549106 (DDX1)
03016 Transfer RNA biogenesis [BR:
tsr03016
]
106549106 (DDX1)
Enzymes [BR:
tsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106549106 (DDX1)
Spliceosome [BR:
tsr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
106549106 (DDX1)
Transfer RNA biogenesis [BR:
tsr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
106549106 (DDX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
SPRY
Helicase_C
ResIII
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
106549106
NCBI-ProteinID:
XP_013922143
UniProt:
A0A6I9YDB0
LinkDB
All DBs
Position
Unknown
AA seq
601 aa
AA seq
DB search
MPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLK
DQQEGKKGKTTIKTGGGVLNKWQMNPYDRGNAFAIGSDGLCCQSREIKEWHGCRGTKGVT
KGKYYYEVSCRDQGLCRVGWSSSQASLDLGTDKFGFGYGGTGKKSHNKQFDSYGEEFTMH
DTIGCYIDADKSQISFSKNGKDLGLAFEIPQHLKNQALFPACVLKNAELKFNFGEEDFKF
PPKDGFTAIDKAPEGNVVKSQHAGSAQVAQSKNLPNAPKALIVEPSRELAEQTLNNVKQF
KKYVENPKLRELLIIGGVAAREQLSVLEQGVDIVVGTPGRLDDLVSTGKLTLSQVRFLVL
DEADGLLTQGYSDFINRIHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWV
DLKGEDSVPDTVHHVVVPVNPKTDKLWERLGKNHIRTDEVHAKDNTRPGTNSAEMWSEAI
KILKGEYAIRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDKKGHQFSCVCLHGDR
KPHERKQNLERFKKADVRFLICTDVAARGIDITGVPYGKTYKPLYRHQESLLLVEGMKLL
S
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgccagaaatagctcaagctgtagaagaaatggactggcttctgcctacagatatccaa
gcggagtccattccattgattttgggaggaggcgatgtactcatggctgcagaaactggc
agtggaaaaactggtgcattcagcatcccagttattcaaattgtttatgaaacactaaaa
gaccaacaggaaggaaaaaagggtaaaactactattaaaactggtggaggagtgctgaac
aaatggcaaatgaatccttatgacagaggaaatgcgtttgctattggatctgatggtctc
tgctgccaaagcagggaaataaaagaatggcatggatgtcgcggaactaaaggtgtaact
aaaggaaaatattattatgaagtatcctgtcgtgaccagggtttgtgcagagttggatgg
tcctcttcacaagcttcattagatttgggtactgataaatttggctttggctatggtgga
accggaaagaaatctcataacaaacagtttgatagctatggggaggaattcaccatgcac
gacacaataggttgttatatagatgccgataaaagtcaaatctcattttccaaaaatgga
aaagatcttggacttgcatttgaaatcccacagcacctaaaaaaccaggccctctttcca
gcttgtgtcttaaagaatgctgaattaaaattcaactttggtgaggaggactttaagttt
ccacccaaagatggcttcactgctatcgataaagcccccgagggtaacgtcgtgaagtcc
cagcacgcaggaagtgcacaagtagcgcagtccaagaatttgccaaacgctcccaaagct
ttgatcgtggagccatccagggagttagcagagcaaactctgaacaatgtgaaacaattc
aaaaaatacgttgaaaatcctaaattgagggaacttctgattattggtggtgttgctgca
agagaacaactctctgtattggagcaaggggtggacatagttgttggaactccaggaaga
ctggacgatcttgtttcgactggaaaattgactttatctcaagttagattcctagttctt
gatgaggctgatggcctccttactcaaggttattcagatttcatcaaccgcattcattct
cagattccccagataacgtctgatgggaaaaggctgcaggtcattgtgtgttccgcaact
ctgcattcatttgatgtaaagaagttatctgagaagattatgcacttccccacttgggta
gatttgaaaggcgaggattctgtcccagataccgtgcaccacgttgttgtacccgtgaac
cccaaaactgacaaactctgggagaggcttggcaaaaatcacatcaggacggatgaggtg
cacgcaaaggataatacaagacctggtacaaattctgcagaaatgtggtcagaagcaatt
aagattttaaaaggagaatatgctattcgtgccatcaaggaacacaagatggatcaagca
atcatcttctgcagaactaagatagattgtgacaatatggaacaatactttatacagcaa
ggaggaggtccagataagaagggacatcaattctcgtgtgtgtgccttcatggagacagg
aagcctcatgagagaaagcagaatttggaacgctttaagaaagcagacgtcagatttttg
atctgcacagatgtagcagccagaggaattgatatcactggtgtgccttacggtaagact
tataaaccactttaccgccatcaagaaagtctactcttagtggaaggcatgaagttgttg
agttga
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