Thamnophis sirtalis (common garter snake): 106549327
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Entry
106549327 CDS
T06107
Symbol
TGFBRAP1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
106549327 (TGFBRAP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tsr04131
]
106549327 (TGFBRAP1)
Membrane trafficking [BR:
tsr04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
106549327 (TGFBRAP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
106549327
NCBI-ProteinID:
XP_013922423
UniProt:
A0A6I9YE35
LinkDB
All DBs
Position
Unknown
AA seq
860 aa
AA seq
DB search
MSVKAFKLVPAVEWELLTGDRSRIHIECVECCGRNLYIGTNEGSICHFLLEEKNPPSEKT
PFSISKQLHKNLSCRKAVGELKAASALNRLLVLCDNTITLMNMMNLEPISTGARIKGALM
FTLNENPVNGDPFCVEVCIVSVKRRTIQIYLVYEDKVQILKECCTREQPSAVAVDGYYLC
LALTSQYIILNYNTGASQELFPYTGEPVVKRIGREEFLLAAPGGLGMFATVDGISQRAPV
RWSEKVIGAALYFPYVIALDEEFITVHSMLDQQQKQTLPFKDGHILQDFEGKVIVATTKG
VYFLVPLPLEKQIQDLLGSRRVEEALVLAKGAERNIPKEKFQTMYKRILQQAGFIQFAQL
QFLEAKELFRSSQLDVRELISLYPLLLPTSSSFMRSHPPLHEYADLNQLTQGDQGKMIKC
KQFLMTYLSEVRSTGVTNGYKEDIDTALLKLYAESNHESLLDLLVSENSCLLADSAAWLE
KHKKFFALGLLYHSNGQDATALQLWIQIVNGEIQDSTRTDLYDYIVDFLTSCSDHELVWK
YAEWILEHNEEVGVYIFTKRPLEDQEKNSFNPDDVIKCLKKYPVSLVKYLEYLVLEKRIK
KEKYHTHLTVLYLNEVLHLKSLGAERQGKLTIMQTKLRSLLQRSDLYRVHFILDKIAGTD
LHAECAILYGKLEEHEKALQILVHELKDFSAAEDYCLWNSESKGLPYRRKLFHLLLSTYL
NSSTSNHELNVAAVDLLNNHAAEFDAAWVLQLIPASWSIQFLSSFLMGAMRESLHSQRMA
EIALSLAKAENLIYKHEKVKLRESPILLSDKKLCQVCQKPFCEPAFVRYPNDTVVHMHCA
SKRLVNSNTNHHLSSSSGWT
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcaaagccttcaagcttgttcccgcagttgagtgggagttgctgacgggtgac
agatctcgaatccatatcgaatgtgtggagtgctgtggacgaaacctctacattggaaca
aatgagggctctatctgccattttctcttggaggagaaaaatcccccttctgaaaaaaca
cctttttctatttccaagcagctgcataagaatctcagttgccggaaggctgtgggagag
ttgaaagcagcttctgcacttaacagacttctggtgctctgtgacaataccatcacttta
atgaacatgatgaacttggaacccatctccactggggccagaatcaaaggagccctgatg
ttcacattgaatgagaaccctgtgaatggggatccattctgtgtggaagtgtgtattgtt
tcagtgaaacggaggaccatccaaatatatttggtctacgaggacaaagtacagattttg
aaagaatgttgcacgcgagaacagccttctgctgtagcggtggatggctattacttatgc
cttgctctcactagccaatatattatactgaactacaatactggagcttcccaggagctc
tttccttatactggtgaaccagttgtgaaaagaataggcagggaagagttcctgttggct
gcacctgggggtttaggtatgtttgccactgtggatggcatttcccagcgggctcctgtt
cgctggtccgaaaaggtgattggggctgccctctattttccctatgtaattgctctcgat
gaagaattcattactgtgcacagtatgctggaccagcagcagaagcaaaccttacccttt
aaggatgggcatatcctacaagattttgaagggaaagtaattgtagctactaccaaagga
gtatacttcttggtcccactgcctctggaaaaacaaattcaagaccttttgggcagccga
agagttgaagaagcactagtgttagcaaagggagccgaaaggaatattccaaaggagaaa
tttcagacaatgtacaagcgaattttgcagcaagcaggatttatccagtttgcacagctc
cagttccttgaagcaaaagagctcttcagaagcagccagctggatgtccgtgagctgatt
tctctctaccctttactgttgcctacttcttcttcattcatgcggtcacaccctcctctg
cacgaatatgctgacctaaaccaacttacacagggggaccaggggaagatgatcaagtgc
aagcaatttctcatgacctacctgagtgaggtccgcagcactggcgtcaccaatggctac
aaggaggatattgacacagccctgttgaaactctacgccgagtccaatcatgaaagcctt
ctggatctcctggtctctgagaattcttgccttctggcagacagtgctgcctggttggag
aagcacaaaaagttttttgcacttgggcttttgtatcactcaaatggtcaagatgctaca
gcactacagttatggatacagatagtcaacggggagattcaggattccacacgcacagat
ctttatgactatatcgtagacttcctaacctcctgttctgaccatgaattggtgtggaag
tacgcagaatggatcttagagcataacgaggaggttggtgtgtacattttcactaaaagg
cccctggaagatcaagagaaaaacagctttaacccagatgatgtcatcaaatgccttaaa
aaatatccggtgtcactagtaaaatacttggagtacttagttctagagaaaagaataaaa
aaagaaaagtaccacacccatctaacagtgctttacctcaatgaagtgctccatctgaag
tcactgggtgctgagaggcaggggaagctgacaataatgcagacaaaactacgcagtctt
ctgcagagatctgacctttaccgagttcatttcattttagataaaattgctggcacagat
cttcatgctgagtgtgcaatactgtatgggaagctagaagaacatgaaaaagctctacag
attctggtccatgaactgaaggacttctcggccgctgaggactattgcctatggaattcc
gagagcaaaggccttccctacagacggaagcttttccatctactgctctcaacatatctc
aattccagcacatccaaccatgaactgaatgtggcagctgttgaccttctgaacaatcat
gcagctgaatttgatgctgcatgggttttgcagctaattcctgccagctggtccatacag
tttctctcctcctttctgatgggtgcaatgagggaaagtctccattcacaaagaatggct
gagattgcactgagcttagcgaaagctgagaaccttatttacaagcatgaaaaggtgaaa
ctaagagaaagcccaatccttctctctgacaaaaaactctgccaggtgtgccagaaacct
ttctgtgaacctgcctttgtccggtatcccaacgacactgttgtccacatgcactgtgct
tcaaagagacttgtgaattccaacacaaaccatcacttatccagctccagtggatggaca
tga
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