Thamnophis sirtalis (common garter snake): 106549382
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Entry
106549382 CDS
T06107
Symbol
DDX5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106549382 (DDX5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tsr03041
]
106549382 (DDX5)
03009 Ribosome biogenesis [BR:
tsr03009
]
106549382 (DDX5)
Enzymes [BR:
tsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106549382 (DDX5)
Spliceosome [BR:
tsr03041
]
Complex A
U1 snRNP components
U1 related factors
106549382 (DDX5)
Complex B
106549382 (DDX5)
Ribosome biogenesis [BR:
tsr03009
]
Eukaryotic type
Pre-60S particles
Helicases
106549382 (DDX5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
P68HR
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
106549382
NCBI-ProteinID:
XP_013922488
UniProt:
A0A6I9YE88
LinkDB
All DBs
Position
Unknown
AA seq
600 aa
AA seq
DB search
MPGYSSERDRGFGGPRFGGSRGGSLGGKKFGNPGEKLTKKKWNIDELPKFEKNFYQEHPD
VARRAMQEIEQYRASKEITVKGHNCPKPVMNFYEANFPANVMEVIQRQNFTEPTAIQAQG
WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQ
QVAAEYGRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTY
LVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGA
LELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRD
GWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSED
YIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLIEDRGSGRSR
GDRRDRYSAGKRGGFGFRERENFERTYGAVGKRDFGAKAQNGGFGAQSFGNGTTFGSSFG
AAGMQGGFRAGTSAYQNGYDQQYGNNMANMHSAMNQQQYAYPTTGGTPMIGYPMPANYTQ
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgcctgggtattccagtgagagggaccgcgggtttggtggccctcgttttggaggaagt
agagggggatctttaggggggaagaaatttggaaatcctggagaaaagcttaccaagaag
aaatggaacatagatgagcttcctaaatttgaaaaaaatttctatcaggaacatcccgat
gttgctcggcgtgctatgcaagagattgaacagtatagagcaagcaaagaaatcactgtt
aaaggtcataactgtcccaaaccagttatgaatttttatgaagctaattttcctgcaaat
gttatggaagtaatccagagacagaactttacagaaccaactgctattcaggctcaaggc
tggcctgttgctttgagtggactagatatggttggtgtagcacaaactggatcagggaag
acactgtcgtatttgttgccagccatagtacatataaatcatcaaccattcctagagaga
ggagatgggcctatttgtctggtgctggcaccgactcgagaattggctcagcaagtgcag
caggtggctgcagaatatggtagagcttgccgtttaaagtctacttgtatttatggcggt
gctccaaagggaccacaaatacgtgatctagagagaggtgtggaaatctgcattgcaaca
cctggtagactcatagattttttagaagctggcaaaaccaacctacggagatgcacttac
cttgttcttgatgaagctgatagaatgcttgacatgggatttgaacctcagatccgaaaa
attgttgaacagattagacctgataggcagacactgatgtggagtgcaacatggcctaaa
gaagttaggcagcttgcagaagacttcttaaaagaatatgtacacatcaacattggggca
ttggagctaagtgcaaaccacaacattctgcagatagtggacgtttgtcatgatgtagag
aaggatgacaagcttattcgattgatggaagaaattatgagtgaaaaagaaaataagaca
attgtgtttgtggagaccaaaagaagatgtgatgatctaacaagaaaaatgaggagagat
gggtggccagcaatgggtatccatggtgacaaaagtcagcaggagagagactgggtttta
aatgaattcaaacatgggaaagctcctattctgattgctacagatgttgcctccagaggt
ctagatgtggaagatgtgaaatttgtcatcaattatgactacccaaactcctctgaggac
tatatccaccgaattggacgaactgcccgcagcaccaaaacaggcacagcatacacattt
ttcacacctaataatataaaacaagtaagcgacctcatctctgtacttcgtgaagctaat
caagcaatcaatcccaaattgctccagttgattgaagacagaggctcaggtcgctccaga
ggggatcgacgtgacagatactctgcgggtaaaagaggtggatttggttttagagaaagg
gaaaactttgaaagaacctatggtgcagtgggcaagagagactttggagcaaaagcacag
aatggtggctttggtgctcaaagttttggtaacggaactacctttggtagcagctttggc
gcagctggcatgcaaggtggatttagggctggcacttcagcctatcaaaatggctacgac
cagcagtatggaaataacatggcaaacatgcacagtgcaatgaaccaacaacagtatgca
taccctacaactggtggtacgccaatgataggttatccaatgccagcaaattatacccaa
taa
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integrated database retrieval system
