Thamnophis sirtalis (common garter snake): 106549513
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Entry
106549513 CDS
T06107
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-10-like
KO
K16499
protocadherin delta 2
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tsr04515
]
106549513
Cell adhesion molecules [BR:
tsr04515
]
Cadherins
Protocadherins
106549513
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Cadherin_tail
Motif
Other DBs
NCBI-GeneID:
106549513
NCBI-ProteinID:
XP_013922676
UniProt:
A0A6I9YET2
LinkDB
All DBs
Position
Unknown
AA seq
1002 aa
AA seq
DB search
MASGSSFAGSLCQPKVVGSLVELRSELGKTRGVAPXLSSCLALAPAPAAGQLRYSVLEEL
DHGAFVANIAEDLGLDVSELSARRFRIATRAGSKQHLEVNLENGILFVNEKIDREEVCEG
SKACLLHLQLVIESPLELYRIEVEVLDINDNAPRFPWQEYVLEVTESALPGARFPLESAQ
DPDVGTNSLRTYRLSPNGYFSLEVQTRSDSSKFAELVLERSLDREQQRSHRVLLTALDGG
IPERSGTARVAIMVLDANDNVPVFDQSTYSVSLPEDAPKGTLAIKLNATDLDEGTNGEIE
YSFSGHAPLGVRELFSVEPHTGQVRLKGQLDYERADLHELYVQAKDRGPSAVAIHCRVLV
HLLDVNDNAPEVTLTSVSTPVLEDAPPGTVIAVISVLDRDSGDNGKVSCEIPTDIPFQLQ
SSFHNYYALVTTAPLDRETVPEYNVSITAQDLGSPALATKKILTVQVSDINDNAPRFLQP
SYSVYVTENNAPGASICSVSARDPDCQQNAYLSYSIADGQIQGMPVATYVSINSDSGHMY
ALRSLDYEQIRNFQIQVVAQDAGFPPLSGNATVHVFVLDQNDNAPLVVAPMPRNGSVAVE
VVPRSAEPGYLVGKVSAVDADAGQNSRLSYRIVQATDASLFSVALYTGEIRTVRAFLAKD
APKHRLLVQVRDNGQPPLSASVALLLSVVDSVPEVLSDFRELPPGGETASSRLTLYLIAS
LGSVSFTFLVAIVILTVVKCPKERLTFPDYACSQLSCGGEGGGSSAFCCCGGGCSSCERS
APASDRFKNSGSVNAPVSSGDCGDVGASAGPPAYCYKVCLSPESAKSDFMFLKACSPAPP
RNNEAGPQNLPPASAPKTRGANNSRQLADQVKQANADWLPSKQPILKSSQSLEDVGKVWK
GVQKDHDRLCTLVTPMSEHKKTSGPPNSIRTPPYAPLYLQHISPLDYQHNVYIPGTPTTS
TNKDSSVFLEQEAKNSFSTFGKRKKMINYSEKHDSMVINNLK
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcgggtcctcctttgctggctcgctctgccaaccgaaagtagttggaagtctt
gtcgagctgcgctccgagttggggaagactcgaggtgttgctcctnngctaagttcttgc
ttggctttggctccggctccagcagctggccagctacgctattcggtactcgaagaactg
gaccacggagcctttgtggccaacatcgcggaagacttaggtctggacgtatcggaatta
tcagcgaggcggtttcgtattgcaacccgggcggggagtaagcaacacctggaggtgaat
ctggaaaatgggatcctctttgttaacgagaaaatagatcgggaagaggtgtgcgagggc
agcaaggcctgcctcctgcacctgcaactggtcatcgagagccctcttgagctttatcgc
atcgaagtggaggtgctagacatcaacgacaatgcaccccggttcccttggcaagaatat
gtgctggaagtgacagaatcagcactacctggggcccgctttcccctggagagtgcacag
gatcccgacgtgggcacaaactccctgcgtacttacagactcagccccaatggttatttc
tcgctggaggtgcagactcgcagtgacagcagcaagtttgcagagctggtgctggagagg
agtctggaccgagagcaacagcgtagccaccgggtcctgctcacggctttggatggtggc
attcccgagcgctcgggcacagctagagttgcgatcatggtgttggatgccaacgacaat
gtgccagtctttgatcagtccacttacagtgtaagcctgccagaggatgcgcccaaaggg
actctggctatcaaactcaacgctactgacttggatgagggaaccaatggcgaaattgaa
tattcattcagcgggcacgctccactaggtgtgcgggagcttttcagtgtggagccccac
actgggcaggtgcgcctgaaaggccaattggactatgagcgagctgatcttcatgagcta
tatgtgcaggccaaggaccggggcccctctgcagttgccattcactgtcgggtattggtg
cacctcctggacgtcaatgataacgcaccggaggtgaccctcacttcggtctccacaccg
gttttggaggacgcacctcccggtactgtcatagctgtaatcagcgtgctggatagagat
tcgggagacaacgggaaggtgagctgcgaaatcccgactgatataccctttcagcttcag
tcgtctttccacaactattatgcactagtaactacggcacctctcgatcgtgagactgtg
cccgaatataatgtcagtatcactgcccaagatctggggtctccagcgctggctaccaag
aagatcctcacagtccaggtgtctgatatcaacgacaacgcgccccgcttcctgcaaccc
tcttacagcgtctacgtgactgagaacaacgctcctggggcatcgatctgctctgtcagt
gcgcgggacccagactgccaacagaacgcttacttgtcctactccatcgcggacggccag
atccagggcatgcccgtggccacctatgtctccatcaactcggacagcgggcacatgtat
gctctgcgctccctagactacgagcagattcgcaacttccagatccaagtcgtggctcag
gacgccgggttccctcctcttagcgggaacgccacggtccacgtcttcgtgctggatcaa
aacgacaacgcgcccttggtcgtggctcccatgccccgcaatggttccgtggctgtggag
gtggtgcctcgctcagcagagcccggctacttggtgggtaaagtctccgcagtggacgcc
gatgcaggacagaactcgcggctttcctaccggatagtccaggctaccgatgccagcctc
ttcagcgtggccctctacacgggcgaaattcgcaccgtccgcgccttcctggccaaagac
gccccgaagcaccgtcttctcgtccaggtgcgggacaacggacagcccccgctctcggcc
tctgtggccctgttgctctcggtggtggacagcgtcccagaggtgctctcggacttccgc
gagcttcctccgggaggcgagaccgcttcttccaggcttaccctctatctaatcgcctct
ctgggctccgtctccttcactttcctggtggccatcgttatcctcacggtggtcaagtgc
cccaaggagcggctgaccttccccgactatgcctgctcgcagctgtcttgtggcggggag
ggcggcggctcctctgccttctgctgctgcggcggcggttgcagctcgtgtgagcgctcg
gcccccgcctcagaccgcttcaagaactccggcagcgtcaacgccccggtctcctcgggc
gactgcggggacgtcggagccagcgcaggccctcctgcctattgctataaagtctgcctg
agccccgaatcggccaagagcgacttcatgttcctgaaggcttgcagtcccgcccctccg
aggaacaacgaagcgggccctcagaacttgccgccggcttccgccccgaaaacccgaggg
gccaataactctcggcagctcgccgaccaggtaaaacaggccaatgcagactggctgcca
tcaaaacaaccaatactgaagagttcacagagcctagaggatgtaggaaaagtttggaaa
ggagttcagaaagatcatgacagattgtgtactttggtcactccaatgtctgaacataag
aagacatctggtccccctaacagcatccggacccctccatatgcacccctctatttgcaa
catatttctcctctggattatcaacacaatgtatatattccaggaaccccaacaacatct
accaataaggacagctctgtatttctggagcaggaggctaaaaacagcttctccacattt
ggaaagaggaagaaaatgatcaattattctgagaagcatgacagcatggttattaacaac
ctgaaataa
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