Thamnophis sirtalis (common garter snake): 106549569
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Entry
106549569 CDS
T06107
Name
(RefSeq) collagen alpha-3(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04510
Focal adhesion
tsr04512
ECM-receptor interaction
tsr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106549569
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106549569
09142 Cell motility
04820 Cytoskeleton in muscle cells
106549569
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tsr04147
]
106549569
00536 Glycosaminoglycan binding proteins [BR:
tsr00536
]
106549569
Exosome [BR:
tsr04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
106549569
Glycosaminoglycan binding proteins [BR:
tsr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106549569
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
106549569
NCBI-ProteinID:
XP_013922738
UniProt:
A0A6I9YEX4
LinkDB
All DBs
Position
Unknown
AA seq
1334 aa
AA seq
DB search
MGNEGPTEYYDGMPGAKGNKGFLGYPGPKGQRGPIGLQGPLGDIGSPGISRPGLSGVPGS
PGLKGKKGERGQPGIDAIGPQGHPGFPGPPGPVGSVGPLGQPGTITFQKGPQGIPGSPGC
IGPPGPLGDDGEKGEESGPCTECTYIMGQPGPAGVAGAEGQQGRKGVEGILGPKGSPGSP
GHTGPPGDQGFPGLPGSQGLKGSKGDANLMHPEGPKGDNGEPGIRGNTGEKGLDGMPGKP
GQKGKKGSAGTQGPDGPKGDRGLPGSVGSPGLPGKIGLTGPPGYGPQGRNGSKGHQGNPG
LPGLPGVPGSKGEPVRVKAIPGTPGLQGPEGAPGLQGRRGKMGSRGQRGDPGIPGKDGDP
GLAENGFPGYPGQKGDKGTQGPKGIPGCVGKAGKPGLPGKPGVPGEKGELGPVIPGQQGS
FGLPGDEGKLGEKGERGSSGLPGTAGQKGFKGADGPKGELGSPGAPGEKGLPGKMGQCLI
GLPGTPGQCGVMGPRGSRGTIGAKGDPGIPGLDIPGFPGRFGLPGLQGPGGIKGLPGING
QRGKPGTPGTPGFRGERGLMGHVGSPGLPGGSGNPGIPGGRGSPGFPGPKGRKGSFGEKG
EPGDKGPPGLPEFKEIYGDKGERGSKGPPGRTGLKGEKGHQGVQGCVGPVGPPGTLRPPG
AKGAKGLSGIPGISGLPGVPGDRGDMGMPGHKGEQGSSGVPGAPGIAGPPGFNGIPGDKG
EPKPGTGPPGNPGPKGNPGLLGERGRKGESGSQGHPGLIGVPGLPGNRGDTGLPGITGQP
GPVGSKGSKGSKGLPGHNGVRGSPGPVGLPGENGLAGEKGNQGYDGTYGPPGETGTRGSP
GQQIPGPKGLPGSKGIKGDMGVAGFPGPQGFKGVMGDQGPGGPPGLPGPPGPPGKPGKIL
SSKGNRGPPGPDGNPGVRGSPGLAGVPGYSIKGNKGVRGTAGTPGLPGMKGDDGPPGMPG
IEGVPGYQGLDGELGFPGLPGIKGEKGNQGPSGPPGIAGPRGPTGLPGQPGPVEKGVSFP
GSPGPAGPPGNPGMSGDPGPRGPPGLPGPPGTMGQSGRHGAPGRTGPPGPKGEKGFQGQK
GLPGLLGSPGTKGLPGFPGSCITSPVKRGFIFSRHSQSTNIPTCPSGTTHIYSGYSLLFV
QGNEQAHGQDLGTTGSCLSRFTTMPFLLCNTQAVCRFASRNDYSYWLSTETPMPEDMAPI
SGRALESYISRCVVCEGPAMMIAVHSQKTLVPPCPQGWQSLWEGFSFVMYTGAGSEASGQ
ALASPGSCLEKFRALPFIECHGRGTCNYYSNSYSFWLATLNSRRMFRKPVPQTLKAGNME
KIISRCQVCMRKPN
NT seq
4005 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatgaaggtccaactgagtattatgatggaatgcctggagcaaaaggaaataag
ggcttcttaggatatccaggacctaaaggtcagcgtggaccaataggactacaaggtccc
ttgggtgacattggaagtccaggtatttcaagacctggtctaagtggtgtgccaggttct
ccaggcctcaaaggaaagaaaggagagagaggacaaccaggaattgatgctattggacca
caaggacatcctggatttccaggcccacctggcccagtaggatcagtaggtcctttagga
caaccaggtacaataacttttcaaaaaggtccacaaggaattcctgggagcccaggatgt
ataggtcctccaggcccattaggagatgatggagaaaaaggtgaagaatcaggcccgtgt
accgaatgtacttatattatgggacaacctggtcctgccggtgttgctggagcagagggt
cagcagggtaggaaaggtgtggaaggaatacttggtcctaaaggatccccaggatctcct
gggcatacagggcctcctggagatcaaggatttccaggccttccaggaagccaaggtctt
aaaggatcaaaaggagatgcaaacttaatgcatccagaaggtcccaaaggagataacgga
gaaccaggaatcagaggaaacacaggagaaaaagggttggatggaatgcctgggaaacct
ggacaaaaaggcaaaaaaggttctgctggaacacaggggccagatggtccaaaaggtgac
agaggattaccaggatctgttggcagcccaggtcttcctggtaagataggattaactgga
ccaccaggatatggaccccaaggaaggaatggttcaaaaggccatcaaggaaatcctgga
ttgcctgggttaccaggtgtacctggttctaaaggggagcctgttagagtaaaggcaatt
cctggaacaccagggctccaagggccagaaggtgcacctggactacaaggaagaagaggt
aaaatgggatccagaggacaaaggggcgacccaggtattcctggaaaagatggggatcca
ggcttagcagagaatggatttcctggttatcctggtcagaaaggggataaaggaactcaa
gggcctaaaggaatacctggttgtgtaggaaaagcagggaaaccaggcttacctgggaaa
ccgggagtgccaggagaaaagggtgaactaggtccagttattcctggacagcaaggaagt
tttggcttaccaggagatgagggaaagttgggtgaaaagggtgaaagaggatcatcaggt
ttacctggaactgcaggtcaaaaaggttttaaaggggctgatggaccaaaaggggagctt
ggaagtcctggagctccaggagaaaaaggtcttccaggaaaaatgggccaatgtctcatt
ggtttacccgggacaccaggtcaatgtggagtaatgggaccacgaggtagcagaggaaca
ataggagccaaaggagatccaggtattccaggattagatatcccaggatttccaggacga
tttggacttcctggattacaaggccccgggggaattaaaggtctgcctggcatcaacggc
cagcgtggtaaaccaggaacgccaggcacaccaggtttcagaggagaaagaggtttgatg
ggacacgtgggtagccctggattgcctggtggttccggaaatccaggaatccctggaggc
agaggttctccgggctttccaggaccaaaaggaaggaaaggatcttttggagaaaaaggt
gaaccaggagataaaggtcctcctgggcttccagaattcaaagagatctatggagataaa
ggagagagaggaagtaaaggacctcccggaagaacagggttaaagggagaaaaaggtcat
caaggtgtgcaaggatgtgtgggtccggttggaccaccaggtactcttcggccaccagga
gctaaaggagctaaaggactttcaggaattcctggaatctctggattgccaggagttcca
ggagacagaggggacatgggaatgccaggtcataaaggggagcaaggttcttcaggtgtg
cctggagcaccaggtatagcaggcccacctggctttaatggtattccaggagataaagga
gaacctaaacctggtactgggcctccaggaaacccaggacctaagggtaatccaggtctt
cttggagagaggggaagaaaaggggagagtggatcacaaggccacccaggtcttattgga
gtacctggactacctggaaacagaggggatactggtttaccaggaattacaggacaacca
ggacctgtgggcagtaaaggtagcaaaggtagcaaaggactgccaggacacaatggtgtt
agaggatctccaggcccagttggattgcctggtgaaaatggattagctggtgaaaagggt
aatcaaggatatgatggtacttatggtccacctggagaaacaggaacacgaggttcacca
gggcaacaaattcctggccctaaaggacttcctggatctaaaggtatcaaaggagatatg
ggagtagctggttttccaggaccacaaggctttaaaggtgtcatgggagaccaaggacct
ggtggacctcctggcctacctggaccaccaggacctccaggaaaaccagggaaaatactt
agctccaaaggaaatagaggtcctcctggcccagatggaaatccaggtgttcgtggtagc
ccaggacttgctggagtcccaggctacagcataaaaggaaacaaaggtgtccgaggaaca
gctggaactccaggcctgccaggaatgaaaggtgatgatggcccacctggtatgccagga
attgagggtgttcctggttatcagggccttgatggtgaacttggctttccaggattacca
ggaataaaaggagaaaagggcaatcagggaccatctggaccacctggaatagcagggcct
cgagggccaacaggactacctggccagcctggaccagttgagaaaggagtttccttccca
ggaagcccaggacctgctggacctccaggaaacccaggaatgtcaggagatcctggtccc
cgtgggccacctgggctcccaggacctcctggtacaatgggccagtcaggccgtcatggt
gctccaggtagaactggaccaccaggacccaaaggagaaaagggatttcaagggcaaaaa
ggtttacctggcttgcttggatctcctggtacaaagggacttcctggattcccaggaagc
tgcataactagtccagtgaaaagaggcttcattttttcccggcacagtcagtcaacaaac
attcctacatgtccatctgggacaactcacatctatagtggctactctcttctttttgtt
caaggaaatgaacaagcacacggacaagacctcggtacaactggtagctgtctttcaaga
tttactacaatgccctttttattatgtaatacccaagcagtatgcagatttgcttcccgc
aatgattactcctactggttgtcaacagaaacaccaatgcctgaagatatggcaccaatt
tctggaagagctttagagtcctatattagcagatgcgttgtctgcgaaggtccagcaatg
atgatagcagtccacagtcaaaaaactttagttccaccctgtcctcaaggctggcaatct
ctttgggaagggttttcctttgttatgtatactggtgcaggttccgaagcttctggacaa
gctttggcatctccagggtcatgtttagaaaaatttcgtgcccttccattcattgaatgt
catggccgaggaacatgtaattactactcaaattcctacagtttctggttggctacacta
aattcaagaagaatgttcaggaaaccagtgccacagactctaaaagctggaaatatggaa
aaaataattagtcgctgtcaagtctgcatgaggaaacccaactga
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