Thamnophis sirtalis (common garter snake): 106549623
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Entry
106549623 CDS
T06107
Name
(RefSeq) transcription factor SOX-5
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tsr03000
]
106549623
Transcription factors [BR:
tsr03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
106549623
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HLH
Motif
Other DBs
NCBI-GeneID:
106549623
NCBI-ProteinID:
XP_013922800
UniProt:
A0A6I9YFV6
LinkDB
All DBs
Position
Unknown
AA seq
504 aa
AA seq
DB search
MSSKQPASPYGEADGEVAMVTGRQKVEEEESGGLPAFHLPLHVSFPNKPYFEEFQPVSLL
TREPCGLRTPTSQQHTMEVDGNKVMSSFAPHNSSTSPSKTDEGGRQSGESFSSTALGTPE
RRKGSLADVVDTLKQRKMEEMIKNEPEETPSIEKLLSKDWKDKLLAMGSGNFGEIKGTPE
SLAEKERQLMGMINQLTSLREQLLAAHDEQKKLAASQIEKQRQQMELAKQQQEQIARQQQ
QLLQQQHKINLLQQQIQVQGQLPPLMIPVFPPDQRTLAAAAQQGFLLPPGFSYKTGCSDP
YPVQLIPTTMAAAAAAATPGLGPLQLQQLYAAQLAAMQVSPGGKLSGIPQSNMGAAISPT
NIHTDKITTSPPPKTKDDVAQPLNLSAKPKTNDSKSPSSPTSPHMPSLRINSGCSSLKSS
VPATLASPSSRVNTIDILSSITSSGYLNDHDAVTKAIQEARQMKEQLRREQQVLDGKVAV
ANNLGLNNCRTDKDKTTLEDLTQQ
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccaagcaaccagcttctccgtatggggaagcagatggagaggtagccatggtg
acaggcagacagaaagtggaagaggaagagagtggcggcctcccagcctttcaccttcct
ttgcatgtgagttttcccaacaagccctattttgaggaatttcagccagtttctctgctg
acgcgagagccttgcggccttaggactcctacctctcagcaacacacaatggaagttgat
ggcaataaagtgatgtcttcatttgccccacacaactcatctacctccccctcgaagacc
gacgaaggtgggcgtcagagcggagaatcattttccagcacggcgctgggaactcctgaa
cggcgtaaaggaagcctagcagatgtggtagacactctcaaacagaggaagatggaggag
atgatcaagaatgagcctgaagaaacccccagtattgaaaaactactatcaaaagattgg
aaagacaagctccttgccatgggatcaggcaactttggagaaataaaagggactccagag
agcctagcggagaaagagaggcagcttatgggcatgatcaatcagctgaccagtttgcgg
gagcagctgctggcggctcacgatgagcagaagaaattggcggcctcgcaaattgagaag
caacgccagcaaatggagttggccaagcagcagcaagaacagattgcaagacagcagcag
caacttctgcaacaacaacacaaaatcaacctgcttcagcaacagatccaggtccaaggt
cagctaccaccactaatgatccccgtgttccccccagaccagcgaaccctagcagcagca
gcccagcaaggatttctcctgccacctggcttcagctacaagacaggctgcagtgaccct
taccccgttcagctgattccaaccacaatggcagctgccgccgccgccgccaccccgggt
ttaggcccactgcaactgcagcaactatacgccgcacaacttgcagccatgcaagtatct
cccggtgggaaactctccggcatcccccaaagcaacatgggggcagcaatatcgcctacc
aatattcacaccgacaagatcaccaccagcccaccacccaaaaccaaggacgacgtggcc
cagccgttgaatctctcagcaaaacccaagaccaacgacagcaagtctccctcgtcacct
acttctcctcacatgccatcattgagaataaacagcgggtgcagctcattgaaatcttcg
gtgccagcaacgttagctagtccatcatccagagtcaacacaatagatatcctctcctcc
atcacatcatcaggttacttaaatgatcacgatgctgttaccaaggcgattcaggaagct
cggcagatgaaagaacagcttcggcgagaacagcaggtgctggatggaaaggttgcggtt
gcaaacaatttgggtttaaacaactgcaggacagataaggacaagacgacattggaggac
ctgactcaacag
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