Thamnophis sirtalis (common garter snake): 106549649
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Entry
106549649 CDS
T06107
Symbol
ERCC3
Name
(RefSeq) TFIIH basal transcription factor complex helicase XPB subunit isoform X1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03022
Basal transcription factors
tsr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
106549649 (ERCC3)
09124 Replication and repair
03420 Nucleotide excision repair
106549649 (ERCC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsr03021
]
106549649 (ERCC3)
03400 DNA repair and recombination proteins [BR:
tsr03400
]
106549649 (ERCC3)
Enzymes [BR:
tsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
106549649 (ERCC3)
Transcription machinery [BR:
tsr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
106549649 (ERCC3)
DNA repair and recombination proteins [BR:
tsr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
106549649 (ERCC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_22
AAA_34
Motif
Other DBs
NCBI-GeneID:
106549649
NCBI-ProteinID:
XP_013922827
UniProt:
A0A6I9YF85
LinkDB
All DBs
Position
Unknown
AA seq
814 aa
AA seq
DB search
MLTFMVPSTFCIKKRLYLCCHVGEGKTVVELYACLITAGFPDKKKLKKRHYEEEEEEEYD
LTGKESQEAVPSAAGKQVEESGPKVDEYGAKDYRNQMPLKADHSSRPLWVAPDGHVFLEA
FSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLQKLSKTGV
PYGIIQFIKLCTVSYGKVKLVLKHNRYFVESTHPEVIQQLLQDQVIRECRLRNAEGEETE
LITETFKSKSAISKSSENSGPSTSQGADGQNKPDVPADLFEFYEQMDKDEEEEEETQTVS
FEVKQEMIEELQKRCIHLEYPLLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFG
NGRARSGVIVLPCGAGKSLVGVTAASTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQI
CRFTSDAKDKPIGCSIAISTYSMLGHTTKRSWEAERVMEWLKSQEWGLMILDEVHTIPAK
MFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNSGYIAKVQCAE
VWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKIIVFADNVFALK
EYAVRLGKPYIYGPTAQGERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSH
GGSRRQEAQRLGRVLRAKKGMIAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKV
ITKLAGMEEEELMFSSKEEQQQLLQKVLQASDLDAEEEVVAGEYGSKSSQISRHYGTMSS
MSGADDTVYMEYQSSRSKASSNKHIHPLFKRFRK
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atgttgacattcatggttccctcaacgttttgcattaagaaacggctctatttgtgttgt
catgtgggtgaagggaaaacagttgtggaactgtatgcatgtttaattacggctggattt
ccagataagaagaaattgaaaaaacgacactatgaggaggaagaggaagaagaatatgac
cttacaggcaaagagtcccaagaagcagttccatcagctgcagggaaacaagtggaagag
tctgggcccaaagttgatgaatatggtgcaaaagactacaggaaccagatgccacttaaa
gctgaccattcttcccgcccattgtgggtggctcctgatggccatgttttcttagaagcc
ttttcacctgtctacaagtatgcccaggattttcttgtggctattgctgaaccagtttgc
cgacctactcacgtccatgaatataaactgactgcttattccctctatgctgctgtcagt
gtgggtttgcaaaccagcgatatcactgaatatctacaaaagcttagtaagactggtgtg
ccttatgggatcattcagtttattaagctatgtacagttagttatggaaaggtgaagctg
gtcctgaagcataacaggtattttgtagaaagcacccaccctgaagtcattcagcaactt
cttcaggaccaagttattagggaatgtcgcctgagaaatgcagagggggaagaaactgaa
ctcataacagaaacgttcaagagcaaatctgcaatttccaagtctagtgaaaatagtgga
ccatcaacttctcaaggggcagatggtcagaataaaccagatgttcctgctgatttattt
gaattttatgaacaaatggataaagatgaagaagaggaagaggaaactcaaactgtgtct
tttgaagtgaagcaggaaatgattgaagagcttcagaagcgttgcattcatctggagtac
cctctgcttgctgaatatgatttcagaaatgattcagtgaatccagatattaacatagat
ttgaaacccacagctgttctccgaccatatcaggagaagagtttgagaaaaatgtttggg
aatggtcgtgctagatctggggttatcgtcttgccttgtggtgctggcaaatcgcttgta
ggcgtaacagctgctagcaccgtccgtaagcggtgcctagtattgggtaattctgctgtc
tcagtggagcagtggaaagcccagttcaagatgtggtctaccattgacgatagccaaatc
tgccgatttacttctgatgccaaagacaagccaattggctgttctatagctatcagcaca
tactccatgttgggacacacaacaaagaggtcatgggaggcagagagagtgatggaatgg
ttgaagagccaagaatggggtctgatgatccttgatgaagtgcataccatacctgcaaaa
atgttcaggcgtgtgctcactattgttcaggcccattgcaagcttggattaacagctact
cttgtccgggaagatgacaaaattgtagacctgaattttctgattgggcctaaactctat
gaagccaattggatggaattgcaaaacagtggttatattgctaaagtccagtgtgctgag
gtttggtgtccaatgtctcctgaattctacagagaatatgtagctattaaaacaaagaaa
cggatattgctctataccatgaacccaaacaaatttagggcttgccagttcctgattaaa
ttccatgaacgaaggaatgataagatcattgtatttgctgacaatgtgtttgctttgaag
gagtatgctgttagattaggcaaaccttatatttatgggcctacagcacagggggagaga
atgcaaatactgcagaatttcaaacacaatcccaaaatcaataccatctttatctccaag
gttggtgatacatcttttgatctgccagaagccaatgttctcattcagatttcatctcat
ggaggttctcgaaggcaggaggctcagaggctgggtcgagtcttgagagctaaaaaagga
atgattgcagaggaatacaatgcctttttttattctttggtctctcaggacactcaagaa
atggcatattctacaaaacgtcaaagatttctagtagatcaaggttacagctttaaggta
attactaaacttgcaggtatggaagaggaagaacttatgttttcatccaaagaagagcag
cagcagctcctccaaaaggttttacaagcttctgacctggatgctgaggaagaggtggtt
gcaggagaatatggttccaagtcatctcagatatctcgacattacggcacaatgagttct
atgtctggagcagatgatacagtttacatggaatatcaatcctcacgaagcaaggcatct
tcaaataaacatattcacccactctttaaacgctttaggaaataa
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integrated database retrieval system
