Thamnophis sirtalis (common garter snake): 106549836
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Entry
106549836 CDS
T06107
Symbol
RC3H2
Name
(RefSeq) roquin-2
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tsr03000
]
106549836 (RC3H2)
04121 Ubiquitin system [BR:
tsr04121
]
106549836 (RC3H2)
Transcription factors [BR:
tsr03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
106549836 (RC3H2)
Ubiquitin system [BR:
tsr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
106549836 (RC3H2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-CCCH
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
Prok-RING_4
zf-C3HC4
zf-C3HC4_4
zf_CCCH_4
zf-C3HC4_2
zf-CCCH_UNK
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
106549836
NCBI-ProteinID:
XP_013923061
UniProt:
A0A6I9YFT8
LinkDB
All DBs
Position
Unknown
AA seq
973 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDENIHKPISLGCSHTVCQSCLSKLHRKACPFDQTAIHTD
IDVLPVNFALLQLVGAQVPDRQALKLSNLGEDKHYEVAKKCVEDLALYLKPLSGSKGVAS
LNQSTLSRPMQRKLVTLVNCQLVEEEGRIRAMRAARSLGERTVTELILAHQNPQQLSANL
WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIALEAGLRISPEQW
SSLLYGDLVHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLEFLANI
DPNPDAAPPTWEQLENATVAVKTVVRGLVDFIQNHSRKGPEIPQPQPNSKYKTSLCRDLR
QQGGCPRGNNCTFAHSQEELEKYRLRNKKIGAATARPFPLLGKASITSAMPPTAGNVISI
LGNTDLAGKAVSGTNRSPSPENGGPQLISRCINSPSLRTLEHMKKGGKAMGNGQNPALSP
NESLPEHQTGCSPKTPVNQTAATSAGPIPPPPPLPPSPALVGSEINPLAPKPSPFTARLP
IYPAHSESLPYFQDPRAHLSYETPPYPQTGYYPVPPAVPAAVPPCLPRFVRSSSVSESSL
PPACLQYSEHYGTFPSRDRLTAAYQQPPPQPYGPVPPIPSGMYAPVYDSRRIWRPPMYQR
DDIIRSNSLPPMEATHPSVYHNFLRERYGSLDSYCPVPCQVPAEQRVVPWARFSENSGGS
SDTKYEDGQLCQYSPWSCSTINSCISAVEAEPKDVQSKSTTVLLDLDSGDPKSPAAHLFE
TQRKAKEEDPIIPFTDGPIISKWGAISRSSRTGFHTTDPIQATASQGSTTKPISMSDYIP
SISSVDLRWSCYYTSDSTSSAPFIERGQFVPPEESAPQKHSSTRDLLSTELQQAKSNSVL
LQREANALATQQK
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtgcaggccgcccagtggacggagttcctgtcctgccccatctgttacaatgag
ttcgacgagaacatacacaagcccatcagcctcggctgctcccacaccgtctgccaaagc
tgcctgagtaagctgcaccgcaaggcctgccctttcgaccagaccgccatccacaccgac
atcgatgtgctgcccgtcaactttgcgctgctccagttagtgggagcccaggtgcccgat
cgccaggctctcaagctgagtaaccttggagaagacaagcactacgaggtggcaaagaaa
tgcgtggaagatctggctctttatttaaagccactgagcggaagtaagggtgtggctagc
ttaaatcagagcacgctgagccggccaatgcaacggaagctggtgacgctggtgaactgc
cagctggtggaagaagaaggccgcatccgggccatgcgggcagctcggtccctcggggaa
aggaccgtcaccgagctgatcttggcacaccagaaccctcagcaactctcggccaatctc
tgggccgctgtccgggccagggggtgccagtttctcgggccagctatgcaggaggaagcc
ttgaaactggtcctgttggccctggaggatggctcggccctctcccgcaaagtcctggtg
ctgtttgtggtccagcgcctggagcccaggttcccccaggcgtcgaaaaccagcatcggc
catgtggtgcagctgctgtatcgggcctcctgcttcaaggtcaccaagagagacgaggac
tcctccctgatgcagctgaaggaggaattccgcagctacgaggccttgaggagggagcac
gacgcgcagatcgtccacatcgccttggaggccggtctccggatctctcccgagcagtgg
tcctccctcctctacggcgacctggtccataaatcccacatgcagtccatcatcgataag
ctccagtctccggagtcctttgcgaaaagtgtgcaggaattaaccatcgtcctgcagcga
acgggggaccccgccaacctgaatcggctgcgtccccatttggaattcttggctaacata
gatcccaacccagatgcagcccctccaacctgggagcagctggaaaatgccactgtggcc
gttaagacagtggtgcgtggccttgtggatttcatccagaaccacagcagaaagggcccc
gagattccacagccgcagccgaacagcaagtataaaaccagtttgtgccgtgacctcagg
cagcagggcgggtgtccacgcggaaacaactgcactttcgctcactcacaggaggagctg
gagaagtatcggctaagaaacaagaaaattggtgccgccaccgccagacctttccctctg
cttgggaaagccagcatcacaagcgccatgccccccactgctgggaatgtcatttccatc
ctaggaaacacggacctggcgggaaaggcagtgtccggcaccaacaggagtcccagcccg
gagaacggcggcccccagctgatctcccgttgtatcaacagcccttcgttacggactctg
gagcacatgaagaaaggcggaaaggccatggggaacggccaaaatcctgctttgtctccc
aacgagtctctgcctgaacatcaaactggctgctctccgaaaacgcctgtgaaccagacc
gcagctacctcagcaggccccattcctcctccccctcctctccctccctcccctgctctt
gtgggcagcgagataaaccccctcgcccccaaacccagccctttcaccgcccgcctgccc
atctacccagctcactcggagagccttccgtacttccaggatcctcgggctcacctctcc
tacgagactccgccttacccgcaaacaggatactacccagtccccccggcagtccccgca
gctgtgccaccgtgcctccctcgctttgtgaggtccagcagcgtctcagaatcctctctc
ccaccggcctgtctacagtatagtgagcattatggcacgtttccttctcgggacagactc
accgctgcttaccaacagccgccaccgcagccctacgggccggtgccgcccattccgtct
gggatgtatgctccggtttacgacagccggcgtatttggcggccaccgatgtaccagagg
gatgatatcatccggagcaactctttacctcccatggaagccacccacccctccgtctat
cacaactttctgcgggaaagatacggctctttggacagctactgtccggtgccctgccag
gtgccagcggagcagagggtcgtgccttgggcgaggttcagcgagaactccggcggctcg
agcgacaccaagtacgaagatgggcagctgtgccagtactcgccctggtcctgcagcacc
atcaattcatgcattagcgcggttgaggcggaaccgaaggacgtccagtctaaatccacc
acagtcctcctagatctggacagtggggaccccaagagcccagcggcgcacctctttgaa
acccagaggaaggccaaggaggaagaccccatcatccctttcactgacgggccaatcatt
tccaagtggggcgccatctccaggtcatcgcggacgggcttccataccacggaccccatc
caggcgactgcttcccaaggaagcactaccaaacccatcagcatgtcagattatatccct
agcatcagctcggtggacctgagatggagctgctactacacgtccgattcaacttcctca
gcacctttcatagaacggggccagtttgttcctcctgaggaatcagctccccaaaagcac
tcaagcaccagagacctcctgagcactgaattacaacaggccaaaagtaactcggtgctg
ctccagagagaagccaacgccctggccacgcagcaaaag
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integrated database retrieval system
