Thamnophis sirtalis (common garter snake): 106549931
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Entry
106549931 CDS
T06107
Symbol
APEX1
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) lyase
KO
K10771
AP endonuclease 1 [EC:
3.1.11.2
]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
106549931 (APEX1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsr03400
]
106549931 (APEX1)
Enzymes [BR:
tsr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
106549931 (APEX1)
DNA repair and recombination proteins [BR:
tsr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
106549931 (APEX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-GeneID:
106549931
NCBI-ProteinID:
XP_013923165
UniProt:
A0A6I9YFX5
LinkDB
All DBs
Position
Unknown
AA seq
316 aa
AA seq
DB search
MPKRVKKEEEEILPAEEGTTEPEPKKAMGDAPKPEKEADGPILYQDPPDKLTTPSDKKYT
MKITSWNVDGIRAWFKKKGLEWVTEEDPDVLCLQETKCTEKQLPAEIRDLAEYPHKFWAC
STDKEGYSGVAMLSKNKPLDVTYGIGEEEHDKEGRVITAEFPSYFLVTAYVPNAGRGLVR
LEYRQRWDEAFRSYLEGLVARKPLILCGDLNVAHQEIDLKNPKGNKKNAGFTPEERAGFT
QLLEAGFVDTFRHLYPDTPNAYTFWTYMMNARAKNVGWRLDYFVISKELLEGLCDSKIRS
SALGSDHCPITLYVAV
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaacgagtgaagaaggaagaagaagagatccttccagcggaggaagggaccaca
gagccagagcctaaaaaggcgatgggcgatgcaccaaaaccagagaaagaggccgatggg
ccaatcttgtaccaagatcctcctgataagctcactacacccagtgacaaaaaatacact
atgaagatcacatcctggaacgtagatggcatccgagcctggttcaagaagaagggcctg
gagtgggtgactgaagaggatcctgatgtgctgtgcttacaagaaacaaaatgtacagaa
aaacagttgcctgctgagattcgggatctggccgaatacccccataaattttgggcctgt
tctactgacaaggaaggctacagcggcgtggctatgctctccaagaacaagcctctagat
gtcacttatgggataggtgaagaagagcatgacaaagaaggccgggttatcacagcggag
ttcccctcctacttcctggtgaccgcctatgtgcccaacgccggtcggggactggtgcgc
ctggagtaccgccaacgttgggatgaggccttccgctcttacctggaaggcctggttgcc
cgcaagccgcttattctgtgcggcgacctcaatgtagctcaccaggagatcgatttgaag
aatcccaagggaaataagaagaatgcgggcttcactccagaagagcgggctggtttcacc
caactgctggaagctggctttgtcgacactttccggcatctctatcctgacacccccaat
gcctacactttctggacatatatgatgaatgcccgggctaagaatgtgggatggaggctt
gattactttgtaatctccaaagagcttctggaaggtttgtgtgacagcaagatccgctcc
tcagccttggggagtgaccactgccccatcaccctctatgtggccgtgtaa
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