KEGG   Thamnophis sirtalis (common garter snake): 106550060
Entry
106550060         CDS       T06107                                 
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tsr  Thamnophis sirtalis (common garter snake)
Pathway
tsr03030  DNA replication
tsr03410  Base excision repair
tsr03420  Nucleotide excision repair
tsr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tsr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    106550060 (LIG1)
   03410 Base excision repair
    106550060 (LIG1)
   03420 Nucleotide excision repair
    106550060 (LIG1)
   03430 Mismatch repair
    106550060 (LIG1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tsr03032]
    106550060 (LIG1)
   03400 DNA repair and recombination proteins [BR:tsr03400]
    106550060 (LIG1)
Enzymes [BR:tsr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     106550060 (LIG1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     106550060 (LIG1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     106550060 (LIG1)
DNA replication proteins [BR:tsr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    106550060 (LIG1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     106550060 (LIG1)
DNA repair and recombination proteins [BR:tsr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     106550060 (LIG1)
   NER (nucleotide excision repair)
    Other NER factors
     106550060 (LIG1)
   MMR (mismatch excision repair)
    Other MMR factors
     106550060 (LIG1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 106550060
NCBI-ProteinID: XP_013923320
UniProt: A0A6I9YHH4
LinkDB
Position
Unknown
AA seq 797 aa
MKFILPLARKQLSKRKPEEDDNSYSYENHSSKRWKENLDGDDSKDKTNEKLIEVEEVKSE
NATLVEHKTDKNAKEEEIPDSSKPSSKSISSFFAPKKSSVKIEKKQAPVVSASISVPKCF
NKISNDETSSIADNFLKPSLTFELAEYNPTKSGYHPVLDACWVPGQKMPYLAVARTFEYI
EKESARLKIIETLSNLFRSAIVLSPQDLLPCVYLCLNQLGPAYEGLELGIGKTILMRALA
QATGRQLDQIKAEAAEKGDLGVVAENSRTTQGTVIAPLKLGAAAVFGKLRAIGQMVGSSS
MNKKIDIIKSLFVACRHSEARYVARSLQGKLRIGLAEQSVLSALAQAASLTPAGQKFPPK
VLDAAKGKSADARKAWLDERVLIVKQAFCELPNYDIIVPVLLEHGVESLPQYCKITPGIP
LKPMLAHPIKGIGEVLKRFEEAAFTCEYKYDGEREQIHILENGEVHIYSRSQENTTTKYP
DIVSRVPKVKNSTVKSCILDAEVVAWDPVSKQILPFQILTTRKRKDVDAADIRVQVCIYA
FDMLYLNGMSLVQKPLSQRRTLLHNSFSEVEGQFLFATSMDTSNVDEIAEFLERSVKDSC
EGLMIKTLEVDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGKGKRAGTYGGFL
LACYDEENEEFQSICKIGTGFSDEDLEKLHNSLKDCVISQPRQYYRWGGTAEPDHWLESQ
HVWEVKCADLSISPIHRAASGLVDEEKGISLRFPRFLRIRDDKKPEEATSSAEVAELYRK
QQQIQNQLSLEKDDVFY
NT seq 2394 nt   +upstreamnt  +downstreamnt
atgaaatttattctacctttagcccgcaagcagctttctaaacgtaaaccagaggaagat
gacaatagttattcttatgaaaaccacagtagtaaaagatggaaggaaaaccttgatgga
gatgattctaaagataaaaccaatgagaaactgatagaagtggaagaagttaaaagtgag
aatgcaacattggtggagcataaaacagataaaaatgcaaaggaagaagaaattccagat
tcctctaagccatccagcaagtcaatttctagtttttttgctcccaagaagagttctgtg
aaaatagaaaagaagcaagcacctgtagtatcagcaagcatatcagtaccaaagtgtttt
aataaaattagtaatgatgagaccagcagcatagctgacaattttctcaagccatctctt
acatttgagcttgcagagtacaaccctacaaagagtggttatcatcctgttcttgatgct
tgctgggtccctggccaaaagatgccatacctggctgtggctcgtacttttgaatatatt
gagaaagaatctgcccggttgaaaattatagagaccttaagcaacctctttcgttccgcg
attgtcctatctccacaagacttgctcccctgtgtctacctctgtctcaatcagttaggc
ccagcatatgagggcctagaattaggcattggcaaaaccatcctcatgagagctctggcc
caggccacaggtcggcaactggaccaaatcaaggcagaggcagcagagaagggagatcta
ggtgtagttgctgaaaacagtcgcacaacacaaggaactgtcattgctccactcaaactt
ggtgctgctgctgtctttggcaaattgcgagcaattggtcagatggtgggaagctcttct
atgaacaagaaaattgacattatcaaatctttgtttgttgcatgtcgccattcagaggct
cgttatgtggctcggtcactacaaggaaagttacggattggattagcagagcagtctgtc
ctctcagctcttgcccaggcagcatcactcactcccgcaggacaaaaatttcccccaaag
gttttggatgccgcaaagggcaaatctgcagatgcacgcaaagcctggctagacgaaagg
gtcttgattgttaaacaggccttctgcgaactaccaaattatgacataatagtacctgtc
cttttggaacatggtgtggagagcttgcctcagtactgcaaaatcacgccaggtatcccc
ctgaagcccatgctggctcatccaatcaaaggaattggggaggtattaaaacgctttgaa
gaagcagccttcacttgtgaatataaatatgatggggaacgggaacagatccacattcta
gagaatggagaagtacatatttatagccgaagccaagagaacaccacaacaaagtaccct
gatattgtcagccgtgttcccaaggtgaaaaacagcactgtgaaatcatgcattttggat
gcagaggtagtggcctgggaccctgtttcaaaacagattcttccattccaaatattgacc
acccgcaaacgcaaggatgtggatgctgcagatatccgagtgcaagtttgtatatatgca
tttgacatgctctaccttaatggaatgtcattagtccagaagcctctgtcgcagcgtcgg
accttactgcataattctttcagtgaagttgaaggccagttcctttttgccacctccatg
gatactagtaatgttgatgagatagcagaattcctggaacgctctgtcaaagactcatgt
gaagggttaatgataaaaacactggaagtggatgctacatatgaaattgcaaagaggtca
cacaattggctgaagcttaaaaaagattatctggaaggtgttggtgacacccttgacctg
gtggtgattggtgcctacttgggcaagggcaaacgggcaggcacatatggaggtttcctt
cttgcatgttatgatgaggaaaatgaagaattccagagcatctgcaagattggcactgga
ttctctgatgaggacttagagaaactccataactcactcaaggattgcgtgatttcacag
ccacgacaatactatcgttggggtggaacagctgaacctgatcactggttggaatcccag
catgtttgggaagtgaagtgtgctgatttatccatttctcccattcacagagcagcatcg
ggtttggtggatgaagaaaagggcatctccttacgttttcccagattcctgcgcatccga
gatgataagaaaccagaggaggcgactagcagtgctgaggtggctgaactttatcggaaa
cagcagcagatccaaaatcaactgtcactggaaaaagatgatgttttctattaa

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