KEGG   Thamnophis sirtalis (common garter snake): 106550350
Entry
106550350         CDS       T06107                                 
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
tsr  Thamnophis sirtalis (common garter snake)
Pathway
tsr04382  Cornified envelope formation
tsr04510  Focal adhesion
tsr04512  ECM-receptor interaction
tsr04518  Integrin signaling
tsr04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:tsr00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    106550350 (COL4A1)
   04518 Integrin signaling
    106550350 (COL4A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    106550350 (COL4A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    106550350 (COL4A1)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    106550350 (COL4A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:tsr04147]
    106550350 (COL4A1)
   00536 Glycosaminoglycan binding proteins [BR:tsr00536]
    106550350 (COL4A1)
Exosome [BR:tsr04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   106550350 (COL4A1)
Glycosaminoglycan binding proteins [BR:tsr00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   106550350 (COL4A1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 106550350
NCBI-ProteinID: XP_013923723
UniProt: A0A6I9YHB7
LinkDB
Position
Unknown
AA seq 1654 aa
MGSSLAGPGIALLLAVLLVPGRRSGSEAAGGCSGCGKCDCNGVKGQKGERGLPGLQGLVG
FPGVQGPEGPPGASGTKGDTGEPGLPGTKGTRGPPGSAGYPGNPGLPGIPGGDGPAGPPG
IPGCNGTKGERGSHGPPGLPGLPGNLGLPGVPGIKGDPGEIISILPGGFQKGEKGLPGHT
GQPGTPGLPGNTGPIGPPGPPGRHGIPGPPGPPGEKGHMGLSFQGPQGEKGERGVMGPPG
PQGTDTQHQEKGTIVIQGDKGDPGEKGDDCIPGRPGKDGEDGEKGERGLPGHPGITGHPG
VLGSKGDKGIVGPPGPPGIVTDERDEEVFGEKGDSGPQGFPGRKGEPGPPGFQGSPGPPG
PPGQAIPGPAGFPGERGRKGDQGPPGTSLPGPKGRDGFTGPRGSPGPPGLPGGTDGIGCE
RGLPGDPGLQGTPGQSGYTGERGEKGEKGESCSECDGAGFPGPTGPQGPQGEQGIPGLPG
AKGDRGSPGFEGIPGVAGPPGVPGLIGIPGPKGEPGEIFYDSIVKGEKGEPGLPGHPGTP
GKEGRPGKDGVPGSPGPKGASGTIGLKGDRGLPGISGLPGSPGDRGFPGPPGVGNPGPQG
DKGDKGVPGIPGTSGLPGPKGEAGRVISLPGPPGARGFPGPAGNPGFQGDKGDPGIPGRP
GLPGEKGLAGPPGIGFPGPSGPPGFPGQPGPQGSRGEKGEHGSQGVPGASGAKGQKGEAG
LGLPGPKGFPGPRGRDGIPGSKGDQGYPGVSGEKGFPGIPGQPGSQGELGPPGLPGVQGS
PGEPQMGSPGPPGPSGQSGPPGPIGPPGIKGERGHPGIPGLDTPGPKGDKGTPGTQGLSG
VPGLPGLPGLQGQQGHPGVPGVKGEMGIMGTPGIQGLPGPIGTPGTPGEKGSLGFPGVAG
PRGDPGLKGEKGEVGLPGEPGKMEKVDMENMKGQKGEQGDKGTKGLIGEKGTPGISGRPG
MPGKDGDPGLPGQAGPKGDSGSPGFQGEAGFPGEKGSMGEMGLPGLPGEKGFQGLPGEAG
QSGFPGVKGEKGRKGDSGLPGIGFPGAPGEKGEQGWPGNSGLPGDKGEKGIPGISGIPGS
PGIKGQSGLPGSPGVPGLAGEKGQKGTPGFSGVPGLKGQPGDPGVQGPHGTAGEKGEPGF
DGIPGTPGSKGDSGLPGRGFPGIPGGKGERGPKGDVGSPGSPGSSGVPGTKGDIGFVGPQ
GPPGQPGIPGLPGNIGEGPKGDRGPQGQPGLQGLPGPQGFPGVSGLPGEKGEKGSQGWPG
QSGQPGPKGDLGVQGIPGSPGFPGTTGQKGDMGPPGIPGPQGLKGSSGFLGSKGVQGDQG
FPGNKGLPGPPGPPGPFQLLKGEPGLPGTPGPAGPKGIPGFPGPKGQQGVTGPSGLTGPP
GIQGIDGTPGQKGDKGPVGPTGPRGFPGPPGPEGMPGVMGPPGRPSMAHGFLVTRHSQTT
EDPSCPFGTRVMFYGYSLLYVQGNQRAHGQDLGSAGSCLRKFSTMPFLFCNINNVCNFAS
RNDYSYWLSTPEPMPMSMAPLTGDSIRPFISRCAVCEAPSMVIAVHSQTVQIPPCPEGWN
SLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFVECHGKGTCNYYANAYSFWLAT
IERNEMFKKPTSSTLKAGELHSNISRCQVCMKRT
NT seq 4965 nt   +upstreamnt  +downstreamnt
atgggtagcagcctggcggggccgggcattgcgctcctcttagcggtgctgctcgttcca
gggcggcggtccgggtcggaggcggcggggggttgttctggttgtggaaaatgtgactgc
aatggagtaaaggggcaaaaaggtgaaagaggtttgccaggtttacaaggcttagttgga
tttcctggagtacaaggaccagaagggcctccaggagcctccggaacaaagggtgatact
ggagaaccaggactaccaggaacaaaaggaacgagagggcctcctggttcagcaggctat
cctgggaatcctggccttccgggcatccctggaggtgatggcccggctggtcctcctggg
atcccaggatgcaatggaacaaagggagaaagaggttctcatggcccacctggtttacct
ggcttacctggcaatctcggacttccaggagttccaggaataaagggagacccaggagaa
attatttcaatcctgccaggtggttttcaaaagggtgagaaaggattgcctggacatact
ggacaaccaggaacacctggacttccaggtaatactggtcctattggaccacctggacct
cctggaagacatggtattcctgggccacctggacctccaggtgagaagggtcatatgggc
ttgagtttccaaggtccacaaggggaaaagggtgagcgtggtgtcatgggcccccctggt
ccccaaggaacagatacccagcatcaagagaaagggaccatcgtcatacagggagacaaa
ggtgatcctggtgaaaaaggtgacgattgcattccaggaaggcctggaaaagatggagag
gatggagagaagggagaacgtggattacctggtcatccaggaattactggacatcctggt
gtacttggatctaaaggagacaagggcatagtaggacctcctggacctccaggaattgtt
acagatgaaagagatgaagaagtctttggtgaaaagggtgattcaggacctcaagggttt
ccaggaaggaaaggtgaaccaggtcccccaggttttcaaggtagtccagggccaccaggt
cctccggggcaagctattccaggaccagctggttttcctggtgaaagagggagaaaaggt
gaccaggggcctcctggaacatctttgcctgggccaaaaggaagagatggatttacagga
cctcgtggttcacctgggcctccaggcctccctggtggaacagatggaattgggtgtgaa
cgtggtctacctggtgacccaggtcttcaaggcaccccaggacagtcaggctacacagga
gaaagaggagagaaaggtgaaaaaggggaaagctgctcggagtgtgatggagcaggtttt
cctggaccaacagggccccaagggcctcaaggggagcaaggcattccaggactaccgggt
gctaaaggtgatagaggctctcctggatttgaaggcattccgggagtggcaggacctcct
ggtgtacctggtttgataggaatcccaggaccaaaaggagaacctggagagattttctat
gactccattgtaaaaggtgaaaaaggagaaccaggattacctggacatccaggtactcct
ggcaaagaaggaaggccaggaaaggatggtgtccctggcagcccaggacctaaaggagca
tctggaaccattggattaaaaggagaccgtggactcccagggataagtggtttaccaggg
tctcctggagacagaggtttccctggtcctccaggagttgggaatcctggaccacagggt
gataaaggagataagggagttcctggaatccctgggacctctggacttccaggtcccaaa
ggtgaggctggacgtgttatttctctccctggtccccctggagcgagaggttttcctgga
cctgctggaaatccaggcttccaaggtgacaagggagacccagggatcccaggaagacct
ggtctgccaggtgaaaaaggtctggcagggcctcctggaattggatttcctggcccttca
gggcccccaggctttcctggtcagccaggtccacaaggttcaagaggagagaagggagaa
catggttcccaaggcgtgccaggtgcatctggcgccaaaggacagaagggcgaagctgga
ttaggtctcccaggtcctaaaggttttcctggtccccgaggacgagatggcattcctgga
tcaaaaggtgaccagggatatcctggtgtgtcaggggagaaaggatttcctggcatacct
ggtcagccaggatctcaaggtgaattgggtcctcctggattaccaggtgtacagggttcc
cctggtgaaccccagatgggctctcctggcccccctggcccttcaggacaatctgggcct
ccaggaccaataggaccaccaggaatcaaaggtgagagaggccacccgggtatccctggg
ctagatacgccaggacctaaaggagacaaagggacgccaggaacacaaggtctgtcaggt
gtgccagggttgccaggcttacctggcttacaggggcaacaaggacatccaggtgttcca
ggagtgaaaggagaaatgggaattatgggtacccctggaattcaaggtctacctggtcct
ataggaactcctggaactccaggtgaaaaaggtagcctaggttttcctggagtggcagga
ccaagaggtgatccaggtttaaaaggtgaaaaaggcgaagttggactcccaggggagcca
ggaaaaatggaaaaggttgacatggaaaacatgaaaggccaaaaaggagaacaaggagat
aaaggaacaaaagggttaataggagaaaaaggaactccaggaatctctggcaggccagga
atgccaggaaaggatggggatcctggtttaccaggccaagcaggaccaaaaggagattcg
ggcagtccaggattccagggtgaagcaggatttcctggagaaaaaggatcaatgggtgaa
atgggtttaccagggctacctggagaaaaagggtttcaaggccttccaggtgaggcgggt
cagtcaggatttcctggagttaaaggtgaaaaaggacgtaaaggagactctggacttcct
ggaattggcttccctggagctcctggtgagaagggtgaacaaggatggccgggcaattca
ggcttacctggagacaaaggtgaaaagggtattccaggtatttcaggcatccctggatcc
ccaggcatcaaagggcagtctggccttccaggttctccaggtgttccaggactggcaggt
gaaaagggacagaaaggaaccccaggctttagtggtgttccaggcttaaaaggacaacca
ggtgaccctggagtacagggcccacatggaactgctggagaaaaaggtgagcctggtttt
gatggaatcccaggcactcctggttcaaaaggtgattcaggtcttccaggtagaggattt
cctggaattccaggtggaaaaggagaaagaggtcctaaaggagatgtgggctctccaggg
agtcctgggagttcaggagttcctggcacaaagggagacattggatttgttggcccacaa
ggtcccccaggccaaccaggcattcctgggttgccagggaatattggagagggccccaag
ggtgaccgggggccccaagggcaaccagggcttcaaggacttcctgggcctcaaggattt
ccaggagtttcaggattaccaggagaaaaaggagaaaagggaagtcaaggttggccaggg
caatctgggcaacctggacccaaaggtgacctgggagttcaaggaatccctggcagtcct
ggtttccctggaactactggtcaaaaaggtgacatgggacctcctggaattccgggtccc
caaggtctaaaaggttcttctggttttttgggatccaagggagtacaaggtgaccaaggg
tttcctggaaataaaggtctgccaggcccaccaggtcctccaggcccttttcaacttctg
aaaggtgaaccaggcctacctggcactccaggccctgctggccccaaaggaattcctggt
tttccaggaccaaaaggacaacaaggtgtcacaggaccatcgggtttgactggcccccca
ggaatacagggaattgacggcacacctggtcagaaaggagataagggccctgtgggtcct
acaggtccgagaggctttcctggtccccctggtcctgaaggcatgccaggggtgatgggt
ccaccgggcagaccctctatggctcacggtttcctcgtgaccaggcacagccaaaccaca
gaggacccctcctgtccatttgggacaagggtcatgttctatggatattctttgctttat
gtacaaggcaatcaacgggcccatggtcaggacttaggctctgctggaagctgtctacgt
aaattcagcacaatgcctttcctattctgcaacattaacaatgtctgcaattttgcttca
agaaacgattattcttattggttgtcaactcctgagcccatgccaatgagcatggctcct
ctaacaggagacagcatcaggcctttcatcagcaggtgtgctgtgtgtgaggctccttct
atggtgatagcagtccacagccaaacagttcaaatcccaccatgtccagaaggctggaac
tctctgtggatcggctactcctttgtgatgcacaccagtgcaggggcagaaggctccggc
caagcactggcctccccgggctcctgccttgaagagttccgcagtgcaccctttgttgaa
tgccatggaaagggcacctgcaattattacgccaatgcctacagcttctggcttgccaca
attgagaggaatgaaatgttcaagaaacctacatcttccacactgaaggctggagaactg
cactcaaatattagccgctgccaagtttgtatgaaaagaacataa

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