Thamnophis sirtalis (common garter snake): 106550420
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Entry
106550420 CDS
T06107
Symbol
POP1
Name
(RefSeq) ribonucleases P/MRP protein subunit POP1
KO
K01164
ribonuclease P/MRP protein subunit POP1 [EC:
3.1.26.5
]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
106550420 (POP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tsr03009
]
106550420 (POP1)
03016 Transfer RNA biogenesis [BR:
tsr03016
]
106550420 (POP1)
03029 Mitochondrial biogenesis [BR:
tsr03029
]
106550420 (POP1)
Enzymes [BR:
tsr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.5 ribonuclease P
106550420 (POP1)
Ribosome biogenesis [BR:
tsr03009
]
Eukaryotic type
Pre-60S particles
RNases
RNase MRP
106550420 (POP1)
Transfer RNA biogenesis [BR:
tsr03016
]
Eukaryotic type
5'processing factors
Ribonucrease P
106550420 (POP1)
Mitochondrial biogenesis [BR:
tsr03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
RNase MRP
106550420 (POP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
POP1_C
POP1_N
POPLD
Motif
Other DBs
NCBI-GeneID:
106550420
NCBI-ProteinID:
XP_013923801
UniProt:
A0A6I9YHZ1
LinkDB
All DBs
Position
Unknown
AA seq
980 aa
AA seq
DB search
MSNAKQKRRGKKMKNQPASVTYPFDAGPSHNEAYFWNGGERTPQRKKQELHFETSQQGFY
QKVSHEMPKCITVSPFVQARAAEIKAMLKAVKQKSSNTLVFQSLPRHMRRRAMSHNVKRL
PRRLRQLATIEAEKPEHQKKALPKSKCRKARRRHINLVLEFNRRQKKNIWLETHIWHAKR
FHMVKKWGYCLGDKPTMKSYRACYRAMTQHCLLQDLSYYCCLELIGKEETLLTALARMCN
VNTGPTFAAISCLSGKRQGSLVLYQKDRYPQDTLGPVTFLWKPRHGSGETSENRQLWIWT
HPAFKQGILAELKSVFQCSEPVETYKPEPVVTFTQEEDKTNIPEHVGHKRKRKDKAGETV
VPVKKIIGDGTRDPNQPYCWSSQTTGITISDLTMEILRYRLIGPLSHCILTEALKVAFVH
TDLDPTDPEINSWWVENCKNPDWVSLHHRQESNFETMQGLASSDIPSGTVLGLTVGDPRV
NLPKKRLKAMPNPAKYQEDKVKQLMLEGVSEECAQSFLWDSNVRKSVTDHKMSEQDLNHL
RSKLLVPGSHLDLGLGESKIPILLVQQPGKMLGDDRLGWGSGWDIYLPKGWGMAFWLPFI
YQGARVGGLQEALKHSLYKGTPHVPHDYPDCPAGSQFAKELEESLLEKFKRRPPAKRANY
IKHGTLAPFLCPWDKLTQNWETRYKVNMESTQLSALEREDCVSEEHVLGGPSSTTSAVDA
PTSKADQQIDTCCQIMQMENEEKAIDPCKTDEVISSQAFCILRTRKLLRQISFWCHPTSG
KRRYRQHRASKMNEKELTEDTLMCINQHYPRALVWVSLSLLRKGNPELHTMICIPEKEDL
LQLDKDQHFCGPQEPKHKDQFKNKLPKQKGRRKKANDGKVTENSALKPMDVMADIQEDLV
LGLWPHPLPDVVSHCSRVLLGFVTQGDFSLASGCGEALGFVSLTGLLQMLIDQPADKKGL
VLLRNPDSLQYRFARLSVEV
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatgcaaaacaaaaaagaagaggcaagaaaatgaaaaaccagcctgctagtgtg
acctatccttttgatgctgggccaagtcacaatgaagcatatttttggaatggaggcgaa
agaactcctcagcggaagaaacaagagttgcattttgaaacttcacaacaaggcttctat
caaaaagtttcccatgaaatgccaaaatgcataacagtgtctccttttgtgcaagcccga
gctgctgaaattaaggctatgttgaaggctgttaaacagaagtcatccaatactttggtg
tttcagtccttgcctagacacatgaggaggcgagctatgagtcataatgttaaacgtttg
ccacgacgtctccgtcaacttgccacaatagaagcagagaaaccggaacatcagaaaaaa
gcacttccaaagagcaagtgccgtaaagccaggcgccgtcatataaacctggtgctggag
ttcaaccgcaggcagaagaagaacatttggctggaaacacacatctggcatgccaagcgg
tttcacatggtgaagaaatggggatactgcttaggagacaagcccacaatgaagagttat
agagcctgttaccgagccatgacacaacattgcctccttcaggatttatcctactactgt
tgtttggaattgattggaaaagaggagacacttttaacagctcttgctcgaatgtgcaat
gtaaacacagggccaacattcgcagctatttcttgcctatctggaaagcgtcaaggttcc
cttgtattataccaaaaggaccggtatcctcaggatacacttggtccagttactttcctt
tggaaacccagacatgggtctggtgagacttctgaaaacaggcaactgtggatatggaca
cacccagcttttaagcagggcattcttgctgaattaaaatcagtcttccagtgttctgag
cctgtggaaacctataagcctgaacctgtggttacttttacacaagaggaagataaaaca
aacattcctgaacatgttggccacaaacggaaaaggaaagataaagcaggagaaacagtt
gttccagtgaaaaagattattggtgatggaaccagagatccaaaccaaccatattgctgg
tcatcacaaactactggaattaccataagtgacttgacaatggagattctccgatatcgt
ttgataggtcccctctcacattgcatccttacagaggcactcaaagttgcatttgtccat
acagacctggatcctacagatcctgaaatcaacagttggtgggtagaaaattgcaaaaat
cctgattgggtatcgctccatcatcgtcaagagtccaacttcgaaacaatgcaaggttta
gcttcctcagacattccatcaggtactgtactgggtttgactgttggggatcctcgagtg
aatttaccaaaaaagagattgaaagccatgccgaatccagcaaaataccaagaagataaa
gttaagcaactgatgttagaaggtgtatctgaagaatgtgctcagagctttctttgggac
tccaatgttcgtaagagtgtcacagaccataaaatgtcagaacaggatttgaatcatctg
agaagtaaacttttggtaccaggatcgcatcttgatttgggcctgggagaatccaagatt
cctatacttctggttcaacagcctggaaaaatgcttggggatgatcgattgggatgggga
agtggctgggatatttatctccccaaaggttggggcatggccttctggctgccttttata
tatcaaggtgcaagagttggtggattacaagaagctttgaagcactctctgtataagggg
acgccccatgttcctcatgattatccagactgtcctgctggtagccagtttgcaaaagaa
ctagaggagagtctccttgaaaagtttaaaaggcgacctcctgcaaaaagagccaattat
attaaacacgggaccttggctccattcctgtgtccatgggataaacttacacagaattgg
gagactcgatacaaagtcaatatggaatccacacagttatcagctttggagagggaagac
tgtgtctctgaagaacatgtccttggtggtcccagctctacaacaagtgcggtcgatgct
ccaacaagcaaagcagaccagcaaatagatacatgctgccaaattatgcagatggaaaat
gaggaaaaggcaatagatccatgcaaaacagatgaggtcatttcaagtcaggccttctgt
attctcaggaccagaaaattattaaggcaaatatcattttggtgtcatcctacatctggc
aaaaggcggtaccgacagcatcgtgcttccaagatgaatgagaaagaactgactgaagat
actctaatgtgtattaatcagcattatcccagggccctagtatgggtgagcttgtccctt
ctcagaaaaggaaatcctgaattgcacacaatgatttgcattccagaaaaggaggacttg
cttcagctcgacaaagaccagcatttttgtggtcctcaggaacctaagcacaaggaccaa
tttaaaaacaagctcccgaagcaaaagggaagaagaaagaaagcgaatgatgggaaggta
acagaaaacagtgccttaaaacccatggatgtaatggcagatatacaggaagacctagtt
ttggggttgtggcctcaccctctaccagatgttgtatctcactgctccagagttctctta
ggctttgttactcaaggggacttctcactggcctctggctgtggtgaagctcttggcttt
gtaagtctgacaggtttgctgcaaatgttgattgatcagccggcagacaagaaggggctt
gtactgttgagaaatccagattcattacagtacagatttgctaggcttagtgttgaagtt
taa
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