Thamnophis sirtalis (common garter snake): 106550559
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Entry
106550559 CDS
T06107
Symbol
TDRD12
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tsr03036
]
106550559 (TDRD12)
Enzymes [BR:
tsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
106550559 (TDRD12)
Chromosome and associated proteins [BR:
tsr03036
]
Eukaryotic type
Gene silencing
piRNA pathway
106550559 (TDRD12)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TUDOR
DEAD
CS
Urotensin_II
Motif
Other DBs
NCBI-GeneID:
106550559
NCBI-ProteinID:
XP_013923967
UniProt:
A0A6I9YID1
LinkDB
All DBs
Position
Unknown
AA seq
1287 aa
AA seq
DB search
MIEVIILKIENPDCFWVYIIDRKFVDNEMEYETLQTEMNQFYNKHYRCVDAKPFALEEGQ
VCAVYCEELKSWCRAVVNSIISYTDYYIAECFLVDYAKTVPVNTKKICVVVKSFMRLPYR
ATKFRLYCVKPLTLRVNYNNDNAEIVPANTWDVAAIQYFQNLLNAATQVEAKLCAVEEDN
FAVYLYVTISDEKVCVNDDLVAKNFAYYELSKTNQKRGSEGAKCLSEEKNPVMLLWPTLL
QESKVSEMGAAPICDNSEKAEFTHFPETNLHKTKQPDIMVPVSTLKQGITFSVPTDMQTD
SNLPNTSTKIQEEENDLHEKNLGVKLLQFLNPDPLKIATGQETEEPKLNITTCLPVVLSN
KIEPCLSLETAPLFPALKKPVALIICSGQKKAELVFELLKMYSYCSRPLHPMLLFLGMNK
EEIKSLRIPRGCEILVTTPPSFLRLLEHHSLLLLRLCHLVFDEVDVLFSDAKEQILAILQ
YYKSNLSVEEKEFAPQQIVAVGNHWDKNVEVLTKEFMSDPYIVITSMEEAAIYGKVQQVV
QLCLECDRISTLLQTLDFTPTDAQKTMIFTSSLEERDMVYKAVESISLFCLKMNPGIGFH
SDYIVEQWNKTISPGTHVVLVLTDDCTTAVKFTDATRVIHFSFPPTPRIFGARLHGLSAN
FQNSVEKGPSLGKEQSKAKSILLLTEKNACHAVGVLHYLKRAEAFIPSDLYNFTRGVLEA
KEEKRSRQPMCSSIKSYGTCKNKKRCPDRHRINLQIDVPSKAVDEALQTGGIITILPLFI
VDATNYLGRVVGKWGNPYTNLETELKDYYQESNNCTPVDKVEKLAVYGLREENYFHRVQA
LDMEQKEDPGVFYNVHIKYIDEGRTGSVQNHHLLSLLERFQTLPPQAVEFIVCRVKPIDN
EAEWHPKVSRYINDKIRGKPHEAKIALILGNTIWVDPVIRVTKLQDLKTSINEYNIRSEI
LSTGLGVDNPEHIQELEKLFNETEIPHEKKEAPTLPPPPTDGRKEKVEPVEQNGSNPATL
SSEASDKEAPPVVQKLQHGQDIIHDGYSQVSLENHCNETVQNKNNEDDPQTSPKCFHPTI
KWFDKQDAVVVKIKLQNISNYDCRIFEQRITFSASANGKSYLADMELQTSILREKSTCVL
KGNEPTLLLVKVKKEPWGNLLKEKNHHVSFDFDYLDDNEERSPFRVGKQFTVLSPVSSHL
KGLESLLYFLQTVQGRRHVSTFIYYTGDGDTDSPRLMTTIEPKIYVAKQGSSPKKVYQIP
IGVCDEEKEEDDESSKDSDSESDSSSC
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atgatagaagtcataatactgaagattgaaaatccagattgcttttgggtctacataatt
gacagaaaatttgtagacaatgaaatggaatatgaaacacttcagactgaaatgaatcaa
ttctataacaaacattatcgatgtgtggatgccaagccctttgcactagaagagggacag
gtttgtgctgtttactgtgaggaactgaaatcttggtgcagagctgttgttaattcaatc
atatcgtatacggattattacattgcagaatgtttccttgtggactatgccaaaactgtt
cctgtgaacactaaaaagatctgtgtggtcgtaaaatcgtttatgagactgccttataga
gctacaaagtttaggttgtactgcgtcaaaccacttacactacgtgtcaactataacaat
gacaatgcagagatagtgcctgctaacacatgggatgttgcagctatccagtatttccaa
aacctcctgaatgcagccactcaagtggaggccaagttatgtgctgttgaagaggataat
tttgctgtctatctttatgtcacaataagtgatgaaaaggtgtgtgtgaacgatgatctt
gttgcaaagaactttgcttactatgaactcagtaaaacaaaccagaaacgaggttcagaa
ggagccaaatgtctttcagaggagaagaatcctgtaatgctgctgtggccaacgttactg
caagaatctaaggtttctgaaatgggtgctgctcctatttgtgataattctgagaaagca
gagtttacacatttcccagaaactaacttacataaaacaaaacagcctgatataatggta
cctgtttccactttgaagcaaggaataactttttctgtgccaacagacatgcaaacagac
agcaacttgcctaacacaagtaccaaaatccaggaagaggagaacgatctccacgaaaag
aacctcggggtgaagcttctgcagtttttaaaccctgatcctctcaaaattgccaccgga
caagaaactgaggagcctaagctgaatatcactacatgtcttcctgttgtgctcagtaat
aaaattgaaccgtgtttatctcttgaaaccgcaccactgtttccagctttaaaaaagcca
gtagcattaatcatatgctctggccagaagaaagcagaactggtatttgagctcctgaaa
atgtacagctattgctcgaggcctctccacccaatgttgcttttcctgggaatgaataag
gaagaaatcaagagtctaagaattccaagaggatgtgaaatcctggtaacaaccccacct
agctttttgcggctgctcgagcatcatagtttactcttgcttaggttgtgtcacctggtg
tttgatgaggttgatgtattgttctctgatgcaaaggagcagatacttgctattttacaa
tactacaaatctaacttgagcgttgaagaaaaggagtttgcacctcagcaaatcgttgct
gttggaaaccactgggacaaaaacgtagaggttttaacaaaagaattcatgagtgatcca
tatattgtaatcacctccatggaagaagctgccatatatgggaaagtgcaacaggttgta
cagctctgccttgagtgtgaccggatctctactttacttcaaacgttagattttacccct
accgatgctcaaaagactatgatttttacaagttctctggaagaaagagacatggtatac
aaggcagtagaaagcatttcactcttttgcttgaaaatgaacccgggaattggatttcat
tctgattatattgtagagcagtggaacaaaaccatcagccctggaacccatgttgtattg
gttttaacagatgactgcacgacagctgtaaaatttacagacgcaacccgtgtcattcat
ttcagctttccgccaactccaagaatctttggtgcccgccttcatggcctgtccgccaac
ttccagaattcagtagaaaagggcccatcactgggaaaagaacagagcaaagccaaatcc
atcttgctgttgacagagaaaaatgcctgccatgcagttggagtgttgcattatttgaaa
cgggcagaagccttcatcccctctgacttgtacaactttaccaggggagtgttggaagcc
aaagaggaaaagagaagcaggcagccaatgtgttcttccattaagtcctacggaacatgc
aaaaataaaaaacgctgtccagatcgccatcgcattaaccttcaaatcgatgtgccctca
aaagcagttgacgaagctctgcaaacaggtggaattataacaatactgcccctctttatt
gtggatgccacaaactacttaggccgtgtggtagggaaatggggtaatccctacacaaat
cttgagacagagctaaaggattattatcaggaatcaaataattgtaccccggttgacaag
gtggagaaactggcagtgtatggactgcgggaagaaaattatttccacagggtccaagca
ctggacatggaacaaaaagaagatcccggcgtgttttacaacgtccacatcaagtacata
gatgaaggaagaaccggctctgttcaaaaccatcatttgcttagtttactggaacgcttt
caaacgctgcctcctcaggctgtggaattcatcgtttgtagggttaaacccattgataat
gaagcagaatggcatccaaaagtatctagatacattaatgacaaaatcagagggaaaccg
catgaagcaaaaatagcacttatcctgggaaatacaatttgggtagatccagtgattcga
gttactaaacttcaagacctgaaaacttcaatcaacgaatacaatattcgctctgaaatc
ctatctactggattgggagtagacaaccctgagcatatacaggaacttgagaaattattt
aatgagactgaaataccccatgagaaaaaagaggcacctacattaccgcctccccccacg
gatggaagaaaggagaaggttgaacctgttgagcagaatgggtccaatcctgcaactctt
agctcagaggcctcagataaagaggccccgcccgttgtacagaaattgcagcacggccaa
gatatcattcatgatggttattctcaagtatctttagaaaatcattgtaatgaaacagtg
caaaataagaacaacgaagacgatccacagacttcgcctaaatgcttccatccaacaatt
aaatggtttgacaagcaggacgctgttgtcgtgaagataaaattgcaaaacatcagtaat
tacgactgcaggatttttgaacagcggatcactttcagcgcttcggcaaatggcaagtct
tatttggccgatatggagctgcagacgagcatcctaagagagaaatcaacctgcgtgctt
aagggcaacgaacctaccctgctccttgtaaaagtgaagaaggaaccttggggcaactta
ctaaaagagaaaaaccatcatgtgtcttttgactttgattacttggatgataatgaggaa
agaagcccgttccgtgtaggtaagcagttcactgttttatctcctgtatcttcacatcta
aaggggttggaatcacttctgtactttctgcaaactgttcaggggagaagacatgtatcc
acattcatttactacactggagatggagatacagatagtcctcgtcttatgaccacaatt
gagcccaaaatttatgttgctaagcaaggatcaagtcctaagaaagtgtatcagattcct
ataggggtatgtgacgaagaaaaagaggaggacgacgaatcttcaaaagatagtgattca
gagagtgattcatcctcttgttaa
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