Thamnophis sirtalis (common garter snake): 106550697
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Entry
106550697 CDS
T06107
Symbol
TAF5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
106550697 (TAF5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsr03021
]
106550697 (TAF5)
03036 Chromosome and associated proteins [BR:
tsr03036
]
106550697 (TAF5)
Transcription machinery [BR:
tsr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
106550697 (TAF5)
Coactivators
SAGA/TFTC/STAGA complex
106550697 (TAF5)
Chromosome and associated proteins [BR:
tsr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
106550697 (TAF5)
STAGA complex
106550697 (TAF5)
TFTC complex
106550697 (TAF5)
SAGA complex
106550697 (TAF5)
SLIK complex
106550697 (TAF5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
NBCH_WD40
WDR55
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_DCAF12
WD_LRWD1
Beta-prop_Nup120_160
Beta-prop_SPT8
Cytochrom_D1
CDK5RAP3
WD40_like
eIF2A
Beta-prop_WDR35_TULP_N
RAB3GAP2_N
VPS8_N
Motif
Other DBs
NCBI-GeneID:
106550697
NCBI-ProteinID:
XP_013924127
UniProt:
A0A6I9YIT1
LinkDB
All DBs
Position
Unknown
AA seq
802 aa
AA seq
DB search
MAALPEEPTEAVAVKPDPDAGAPPPAPPAPLSQSPISTAAAVATTVPPASASSVPATLLA
DGEPLAGGVDAKSSVTSSPTPPASQLPADKQTLLAVLQFLRRSNLRESEEILRREARGLV
DDVPSDPNSSAPGVPGAHGGEGQDPSAGILTPGAADVLINSITFGQTGPTISPAAITTPP
AAPLGHPGKAGVLVEDQPDVSAVLSAYNQQGDPALYEEYYSGLKHFIECALDCHRAELSQ
LFYPLFVHMYLELVYNGHENEAKSFFQKFHGDQECYYQDDLRVLSSLTKKEHMRGNETML
DFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGS
LAGEAKREANKAKVFFGLLKEPEIELPLDDEDEEGENEEGKPKKKKPKKDSMGSKSKKQD
PNAPPQNRIPLPELKDSDKLDKIMNMKEATKRVRLGPDCLPSICFYTFLNAYQGLTAVDV
TDDSSMIVGGFADSTVRVWSVTPKKLRSVKSATDLSVIDKESDDVLERIMDEKTASELKI
LYGHSGPVYGASFSPDRNYLLSCSEDGTIRLWSLLTFSCLVGYKGHNYPVWDTQFSPYGY
YFISGGHDRVSRLWATDHYQPLRIFAGHLADVTCTRFHPNSNYIATGSADRTVRLWDVLN
GNCVRIFTGHKGTVNSLAFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHSDTIYALR
FSRDGEILASGSMDSTVKLWDAVKAFEDLETDDFTTATGHINLPESSQDLLLGTYMTKST
PVIHLHFTRRNLLLAAGAYSPQ
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggctgctttgccggaggagccgacggaggcagtagcggtaaagccggatcctgatgca
ggagcgccgccgcccgctccgcccgctcctctctcccagtccccgatctcgacggcagca
gcagttgcaacaactgtccctcctgcgtcggcgtcctcggtccctgccacccttctcgcg
gatggggagccgcttgcgggaggagttgacgcgaagagctcggtgacttccagccccacg
ccgccagcctctcaactacccgccgacaagcagactctgctggcggtgctgcaattcttg
cgccgcagcaatctgcgcgaatcggaggagatcctccggagggaagcccgtggtcttgtc
gacgacgtcccgagcgacccgaattcctcagctcctggggtccccggagctcatggaggg
gaaggacaggatcccagcgccgggatcttgacccctggagcggcggacgtgctaatcaat
tctatcacttttggccagactggacctacgatctctccagctgctatcacgacacctccc
gcagcgcccttgggccatcctgggaaagccggagttcttgtagaagatcagccagatgtg
agtgcagtgctatctgcttataatcaacagggagacccagcactttatgaagaatactac
agtggattgaaacacttcattgaatgtgctctggattgtcatcgagctgaattatcacaa
cttttttatcctctgtttgtacacatgtacttggaactagtctacaatggacatgaaaat
gaagcaaaatcattctttcaaaagtttcacggggatcaagaatgttattaccaagatgac
ttgcgtgtactatcaagtttaaccaaaaaagagcatatgaggggcaatgagactatgctg
gattttcgaacaagcaagtttgtgttgcgtatttcccgtgactcttaccaacttctgaag
agacatcttcaggaaaaacagaacaatcagatctggaacattgttcaagaacatctttac
attgatatttttgatggaatgcctcgtagtaaacaacaaattgatgctatggtgggaagt
ttagctggagaagcaaaacgagaagcaaataaagcaaaggtattttttggcttattaaaa
gaaccagaaattgagttacctttggatgacgaagatgaagagggagagaatgaagagggc
aagccaaagaaaaagaagccaaaaaaagatagtatgggatcaaaaagtaaaaagcaggac
ccaaatgctcctcctcagaatagaatccctcttcctgagctaaaggattctgataaactg
gataaaataatgaatatgaaggaagctactaaacgtgttcggcttggtcccgattgtttg
ccttccatttgcttctacacatttcttaatgcataccagggtcttacagctgtggatgtt
acagatgactctagcatgattgttggtggctttgctgattccactgtcagggtatggtct
gtgacacccaaaaagcttcgcagtgtaaaatcagctacagatctcagtgtcatagataaa
gaatctgatgatgttttagaaagaatcatggatgaaaaaacagcaagtgaattaaagatt
ttatatggtcatagtggacctgtctacggtgctagctttagtcctgataggaattatttg
ctatcatgttcagaggatggcacgatcagattgtggagtcttctaactttttcttgtttg
gtgggatacaaaggacataattatcctgtatgggacacacaattctctccatatggatat
tattttatatctggtggccacgatagagtgtctcgtttgtgggctacagatcactatcag
cctttgcggatctttgctggtcatctggcagatgtcacatgtacacgttttcacccaaac
tccaactacattgccacaggctcagcagacagaactgtgagactttgggatgtactgaat
ggaaactgtgtaagaatctttacgggacataagggaacagttaattcattagcattttct
cctaatggacgatttttggcaactggagcaactgatggaagagtgcttctgtgggatatt
ggtcatggtttaatggtaggagagctaaaaggacattcagacacaatttatgcactcagg
ttcagtagagatggagagatcttagcttcaggttcaatggacagtacagttaaactttgg
gatgctgtgaaagcttttgaggacttggagacagatgattttacaacagccactggacac
ataaaccttcctgaaagttcacaggacttgcttctgggcacatatatgaccaaatcaact
ccagttatacacctccactttactcgaagaaatttacttcttgctgctggggcttatagt
cctcagtaa
DBGET
integrated database retrieval system
