Thamnophis sirtalis (common garter snake): 106550699
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Entry
106550699 CDS
T06107
Name
(RefSeq) protein RRP5 homolog isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tsr03009
]
106550699
Ribosome biogenesis [BR:
tsr03009
]
Eukaryotic type
90S particles
Other 90S particles
106550699
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_Syf1_CNRKL1_N
Suf
HAT_PRP39_N
HAT_PRP39_C
OB_RRP5
TPR_14
HAT_Syf1_CNRKL1_C
OB_RRP5_4th
TPR_19
TPR_CcmH_CycH
ARM_TT21_5th
ARM_TT21
HAT_Syf1_M
TPR_12
TPR_7
Motif
Other DBs
NCBI-GeneID:
106550699
NCBI-ProteinID:
XP_013924129
UniProt:
A0A6I9YJH1
LinkDB
All DBs
Position
Unknown
AA seq
1812 aa
AA seq
DB search
MSSVEENFPRGGTQKKGKEEKTVRQPTVDDNLFKTQHEEVTRKRKKKHEDQKEPKKLKSE
KKAVSKTSIKDFELLSAESLTEGTLLLGCVKKSNQFDLVISLPNGLTGFVKITCLCDAYS
ELLNKQVATDEPMEELNSLSDLFPPGMLVRCAVVGTEKNAMGHQKIHLTVNPKDVNKGLN
PTVLKEGMLLSGCVSSIEDHGYLIDIGIPGTKAFLPRQKAQGSLQSLIKGTELMIGQYLN
CLIEEVKNGGRIIRISINQSEVASAIATEKQNWSLANLLPGLVVKAQVQEVTTSGISLSF
LSSFTGIVDFMHTNSLKTGHLSPNQMVKACILSNNPASKAIRLSLRPVFLQPGIQLGQLS
NDRIGVVVTDSKVEIFLKNIGAVFTLDDGSHAFSHIKYLPKTSKSFKTEVFKRGSKHTCR
IIDYSLIDDMIVVSLKEHIVNAPFLRYHDIHPGQVLEGKVLTLKPLGMQVKFTESIRGFV
PNLHLADVKLKQPEKKYSTGTTVKCRVLVCNPETRKLILTLKRTLVNSKLPVLDSFEDAK
PGLITHGFVACVKDFGCIVKFYNDVRGLVPTNELGLLPLTAPQEAFYEGQVVKVTVLTCE
PEQERLLLSFRLEEDAVAKNAGRTEISKDREMAYKTGQIVDVKILNKKEDGLEVAILPNN
VSAYLPMAQLSDHVSNSRLWWHWLKEGDVLQKVICLHSKGGHILLSRKPALISFMEDEHV
VKSFADIQPGILLTGFVRNIMSYGVFVEFPYGLTGLAPKSAMSDKFVTDTKDHFVVGQTV
LAKVTSVDEEKQRILLSLKMSECSVEGSVPESFGLLEQYFNELQEIMSFMSNRDDSSVAK
KLSKFKVGQRLELVVTEVKADGSAVFSGPCVSDLIVIAIHSQLGGKSILEGQKAKAVVLC
VDLLKSKIYVSLREELLSLKAKKLILNSQYEAIVHHVATEHAVVSLLGTDQLTAIPVASH
LNDTFRFDSEKLKTGQSVKVVLKSTQIGDHGMVLAMQSSGKKCVIRSRHESETLEDTSLA
TKQLPSSGDIVRGIVKSVKPTHVLVAFNDRLTGSLHASQILDDVTIGTFPTSLLKVGQKI
TARVIGGRGIKSHKYLPITHTHFTRTFLELSIRPSELKRESKATLNAEKDHPEEPLKPGQ
TVTCYVKNYNVLKKRLEVEISPTIRGRILQLLLSSNPKDIKHARKCFKKGQALIATVIDC
DISGTKLALSLTGTRSLEKGTIVLGTVKRVIPHVGLHIILPFGRIGRVSLFHLNDSYTEQ
PLEDFGVGKIVRCYILSIEDNAVKVSLRPSRINPKGHQKVEDPEIASLDNIQNDQLIRGY
VKSITASGISLGLSDSVVGQISLQYVTPFFVPDHLLCMKYIHTDQLLTAKVLSINRRENL
VELSLLPEDTGKPSIIPCDEKPCSETDTPSQKSRNQRRKRSESEQEVTPAKKRAYCTEEG
DSGVEVYYREEEEKEKKHKKKSKQGKEVPRLKISTSFMWEEGLNVLDGTTLIPKEQSSDS
EEENDAESMAKKQTKKKQELEKQKAEKELSKLEAALMDPKRQPQTADDFDRLVLGSPDSS
ILWLQFMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGTEEGLMK
VFERAVQYNEPLKVFQQLADIYSASEKYKEAEDLYSTMLKRFRQEKSVWVKYTTFLLKRG
LVEAAHRLMPRALKCLPDKEHVDVISKLAQLEFQFGDAEHGKAMFENMLSTYPKRTDVWS
VYIDVMIKHGSQKEVRDIFERVIHLNLTAKKMKFFFKRYLEYEKKYGTVETIQAVKAAAL
EYVESKNNLAES
NT seq
5439 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctgtggaggagaattttccaagaggtggtacacagaagaaaggaaaggaagaa
aaaacagtcagacaaccaacggtagatgacaatttattcaagactcaacatgaagaagta
actcggaaaagaaagaaaaaacatgaagatcaaaaggagccaaaaaaacttaagtctgag
aagaaagctgtttcaaaaaccagtattaaagattttgaacttttgtcagcagagtctctt
acagaaggaacactgctgttaggatgtgtgaaaaagagtaatcaatttgatctggtgatc
agcttaccaaatggtcttactgggtttgtgaaaataacgtgcctatgtgatgcttatagt
gaactgctaaataagcaggtggccactgatgagcctatggaggaactgaattctctctca
gacttgttccccccaggaatgttggtgagatgtgctgtggtaggcacagagaagaatgct
atgggacatcaaaagatacacttaaccgttaatccaaaagatgtcaacaaaggtttgaat
cctacagttttgaaagaaggcatgctactctctggatgcgtatctagtatagaggaccat
ggttaccttattgatataggtattcctggaacaaaagcatttcttcctcggcagaaagcc
cagggctctctgcaatcactcatcaaagggactgaactgatgataggccaatatctgaac
tgccttattgaagaagtaaagaatggtggaagaataatccgcatatccatcaatcagtct
gaagttgcttcagccattgccacagagaaacaaaactggtcacttgccaacttgctacct
gggctagtggtgaaagcccaggttcaggaggtgactacttctggaatttctctaagtttt
ctctcttcctttactggaattgtggatttcatgcacacaaactctctaaaaacagggcac
ttatcaccaaatcagatggtgaaagcctgtattctttcaaataatcctgcctccaaggca
attcgcctttctttgcgcccagttttccttcagcctggcatccagcttggccaactttcc
aatgatcggattggtgtggtagtgacggactcaaaagtagagatatttctcaaaaacatt
ggtgctgttttcaccctggatgatggcagtcatgctttttcacatataaagtatcttcca
aagacttccaaatctttcaaaactgaggtgtttaagcgtggaagtaaacatacatgccga
attattgactacagcttgatagatgacatgatcgtggtgtctctcaaagaacatattgtt
aacgctccatttctgagatatcatgatatacatcctgggcaagtgctggaaggaaaagtg
ctgactctgaagccattgggcatgcaggtgaagttcactgagagtatcagaggctttgtc
cccaatttacatcttgcagatgtgaaattgaaacaaccagagaagaagtatagcacgggg
actactgttaagtgccgggtacttgtctgcaatcctgaaacaaggaagcttattctgact
cttaagagaacccttgttaattccaagctccctgtccttgacagttttgaagatgccaag
ccaggcctgatcactcatggttttgttgcgtgtgttaaggattttggctgcattgtgaaa
ttctataatgatgtgaggggcttagtacccactaatgaacttggtttgctccccttaact
gctcctcaagaagccttctatgaaggccaggtggtcaaggtgacagtattaacatgtgag
cctgagcaggaaagattgttgctgtcattcagattggaagaggatgctgttgcaaagaat
gctggaagaacagaaatttcaaaggatcgtgaaatggcatataaaactggacagattgta
gatgtaaaaattctgaacaagaaagaagatggcttagaagttgcaatcctacccaacaat
gtttcggcctaccttcccatggcacaactttctgatcatgtgtccaatagcaggttgtgg
tggcactggctcaaggaaggtgatgttctccaaaaggttatatgcctccatagcaaagga
ggtcacattcttttgagtagaaagccagcattgatttcctttatggaggatgaacatgta
gtgaagagttttgctgatatccagcctggaatactgcttactggctttgtgagaaacatc
atgtcttatggtgtatttgtggagtttccctatggtttgactgggctggcccccaaatcg
gcaatgagtgacaagtttgtgacagacaccaaagaccattttgtggtaggtcaaactgta
cttgccaaggtgaccagtgttgatgaggagaagcagcgcatcttactgtccctgaagatg
tcagagtgctctgttgaggggtcggttcctgagagctttggcctactggaacagtacttt
aatgaactgcaggagattatgagtttcatgagcaatagagatgattccagtgtggctaag
aaactctccaaatttaaagtgggacagaggctagaattggtagttaccgaagttaaggct
gatggttcagcagtttttagtggtccatgtgtttctgatttgattgtaatagccattcac
agccaacttggaggcaaaagtattcttgaaggtcaaaaagcaaaagctgtagttctctgt
gttgatcttctgaaatcaaaaatctatgtatctcttcgagaggaactgctgtctctcaaa
gccaagaagttaatcctgaattctcagtatgaggctattgttcaccacgtggctacagag
catgcagttgtttccttgttaggaacagatcagctgactgcaattcctgtggcttctcac
ttgaatgacacattccgatttgattctgaaaaactgaagacgggacagtctgtcaaagtg
gttctgaaaagcacacagattggtgatcatgggatggtacttgcgatgcaaagttcaggg
aagaagtgtgtaatcagatcacgtcatgaatctgagacactagaggatacatcacttgca
acaaaacagttgccaagctcaggagacatagtcaggggaattgtgaagtctgtcaaaccc
acccatgtcttagtggcgtttaatgatcggttgactggctcccttcatgcgtcccagatc
ctggatgatgttaccataggcacttttccaacatcattactaaaagttggacaaaagatt
actgctcgggtgattggaggaagaggcattaaaagtcacaaatatttgcccatcacccac
acccacttcacccgtacattcctagaactcagcatccgaccaagtgaactgaaaagagaa
agcaaagcgaccttgaatgctgaaaaagaccatccagaagaaccactgaaacctgggcag
acggtgacatgctatgttaagaattacaatgtgttaaagaaacggctggaggtggagatt
agtcccaccatcagagggagaattttgcagctgctgctttcttcgaatcccaaggatata
aaacatgccaggaaatgcttcaaaaaaggacaggcattgattgcaacagtgatagattgc
gatatttctggaaccaaacttgctttgtcactaacaggcactcgttcattggagaaagga
acaattgtactgggcactgtgaaacgagtgattccccatgttggtctacatattatcctt
ccatttgggaggattggcagagtcagtcttttccacctaaacgattcatacacagaacaa
ccgcttgaagacttcggtgttggaaaaatagtcagatgttacattctttccattgaagac
aatgctgtaaaagtatccctccgaccatccaggataaatcctaaaggccatcagaaagtt
gaggatcctgaaattgcttctcttgataacattcagaatgatcaactcatcagaggctac
gtcaaatccattacagcatcaggcatctctttggggttgtctgattcagtggtgggtcaa
atttccctccaatatgtcaccccattctttgtgccagatcatttgctctgtatgaagtac
atacatacagatcagcttctcactgccaaagttctcagcataaatagacgggagaacctt
gtggagctttctctccttcctgaagacacagggaagccaagcattattccatgtgatgaa
aagccatgtagtgaaacggatacaccctcccagaaatcaagaaatcaaaggaggaagcgc
tctgaaagcgagcaggaagtaacgccagcaaaaaagagagcttattgtactgaggagggt
gatagtggtgtggaggtttattatcgggaggaagaggagaaggaaaagaagcataaaaag
aagtctaagcagggaaaagaagttccacgactgaagatttcaaccagctttatgtgggag
gagggcttaaatgtgctggatggaaccacattgattccaaaggagcagagctcagacagc
gaggaagaaaatgatgccgaatccatggccaagaaacaaacaaaaaagaaacaggagctg
gagaagcaaaaagcagagaaagaactctctaagctggaagctgccctgatggatcccaag
cgacagccgcagacagcagatgactttgaccgcttggtactcggcagtcctgacagctcc
atcctttggttgcaattcatggcttttcatctccaagctacagagatcgagaaagctaga
gctgttgcagaaagggcactaaaaactatctcctttagagaggaacaagagaaactgaat
gtgtgggtcgctttgctgaacctggagaacatgtatggcacagaggaaggactgatgaaa
gtttttgaaagagcagttcagtacaatgagcctctgaaggtctttcagcaattggcagac
atctacagcgcgtctgagaaatataaggaagctgaggacctatatagtacaatgctgaaa
cgcttccgtcaagaaaagtctgtgtgggtaaagtacaccacttttcttctgaagcgtggt
ttggtggaggcagctcacagacttatgccacgggcactgaaatgcttgccagacaaagag
cacgtggatgtgatttcaaagctggcacagttagagtttcagtttggtgatgcagaacat
ggcaaggccatgtttgaaaacatgctgagcacataccctaaacgtacagacgtctggtca
gtgtacatagatgtaatgataaaacatggaagccaaaaagaagtccgggatatttttgaa
agagtgattcacctaaacttaacagcaaagaagatgaagttcttctttaaacgctacctg
gagtatgagaagaagtatggcaccgtggaaaccatccaggctgtgaaggcagcagcattg
gagtatgtggaatccaagaacaaccttgctgagagctaa
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integrated database retrieval system
