Thamnophis sirtalis (common garter snake): 106551060
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Entry
106551060 CDS
T06107
Symbol
DDX39A
Name
(RefSeq) ATP-dependent RNA helicase DDX39A
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tsr03041
]
106551060 (DDX39A)
Enzymes [BR:
tsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106551060 (DDX39A)
Spliceosome [BR:
tsr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
106551060 (DDX39A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
106551060
NCBI-ProteinID:
XP_013924543
UniProt:
A0A6I9YJJ5
LinkDB
All DBs
Position
Unknown
AA seq
427 aa
AA seq
DB search
MAEQDVENELLDYEDDEEPQGVTDATPPLVKKDVKGSYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPLDGQVSVLVMCH
TRELAFQISKEYERFSKYMTSVKVSVFFGGLSIKKDEEVLRKNCPHIVVGTPGRTLALVR
NKTLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPPEKQCMMFSATLSKEIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYVKLKDTEKNRKLFDLLDVLEFNQVVIFVKSVQRCM
ALAQLLVEQNFPAIAIHRGMSQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEGDAKILNEVQDRFEVNVAELPEEIDIS
SYIEQSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggctgagcaggatgtggagaatgagttgctggattatgaagacgatgaagagcctcaa
ggagtgacagatgcaactcctcctcttgttaaaaaggatgtgaagggctcttatgtctcc
attcacagttctggcttccgagatttcctgctgaagccagaattacttcgtgccattgtg
gattgtggctttgaacatccatcagaagtacaacatgagtgcattcctcaggcaattcta
ggcatggatgtactatgtcaagccaaatcgggcatgggcaaaactgctgtttttgtattg
gctactctgcagcagattgagccactggatgggcaggtctcggtgctagtgatgtgtcat
acccgggaattggcattccagatcagtaaagaatatgaacgcttctcaaagtatatgacc
agtgtcaaggtatcagttttctttggggggctttctatcaagaaagatgaagaggtactt
aggaaaaactgtccgcatattgttgtgggaaccccaggccgtactctagcattggtacgc
aacaagacactcaatctgcgcaatgtgaagcattttgtgttggatgagtgtgacaagatg
cttgaacagctagacatgcgccgtgatgtacaggaaatctttcgattgactccccctgaa
aagcagtgcatgatgtttagtgccaccttgagtaaggagatccggcctgtctgcaggaag
ttcatgcaggaccccatggaggtatttgtagatgatgagacaaagttgactctacatggt
ctgcagcaatactatgtaaagctgaaagacacagagaaaaaccgcaaactttttgacctg
ctggatgtactggagttcaatcaggttgtgatatttgtaaagtctgtgcagcgctgcatg
gcattagcccaacttctggttgaacaaaacttcccagctattgctatacatagaggcatg
tctcaggaagagaggctctctcggtatcaacagttcaaagacttccagcgtcgtatcttg
gtggccactaatctgtttggccgtgggatggacatagagcgagtcaacatagttttcaac
tatgatatgcctgaggattccgatacctacttacatagggtggccagggctgggcgtttt
ggtacaaaaggcttggcgattacctttgtgtcagatgaaggagatgccaaaatcctcaat
gaagtacaggatcgctttgaggtcaacgtagctgagctcccggaagagatagacatctcc
tcttatatagaacaaagccggtag
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