Thamnophis sirtalis (common garter snake): 106551496
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Entry
106551496 CDS
T06107
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
tsr01001
]
106551496 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
tsr04054
]
106551496 (CIITA)
Enzymes [BR:
tsr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
106551496 (CIITA)
Protein kinases [BR:
tsr01001
]
Serine/threonine kinases: Other
TAF1 family
106551496 (CIITA)
Pattern recognition receptors [BR:
tsr04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
106551496 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_8
nSTAND_NTPase5
AAA_16
LRR_14
AAA_22
AAA_25
CARD
NB-ARC
DUF7885
nSTAND3
SLFN-g3_helicase
LRR_9
Motif
Other DBs
NCBI-GeneID:
106551496
NCBI-ProteinID:
XP_013925086
UniProt:
A0A6I9YLS6
LinkDB
All DBs
Position
Unknown
AA seq
1085 aa
AA seq
DB search
MDLFKQILPEVREVLLTASAPQLQTFLDSMLSEGILSREYYQTLLDEKDTDDLARKLALT
LLGKRAGPSDPHSRLPPLQLSGNARGPAKNGAVSLRTRNWTAAPAPDEVSPGGIPPETPC
LQSEAHPASMDEMEEAPAVQASEAASDDQDNPEVFYTVERDESGEVLSLCADMGEAYDKI
AALAEYLLKDQQDAPADEHFERLFWDGGAAEGPGGCAEARSRGPSSDGPEAKRLRLAHPP
ALCIVNRDPLALPLNPGQDGTDSPPEFHVQILVATVGPAGRSPEALGSPRAFCKGLKEHF
RRECRSGPGQPLGPLYLERDLVQHHLDSRGGRSADLRRCHLGEKRKASVERSRLFQTARR
KEPGSRVIVVLGKAGTGKSLLVQKVCLDWAEGLLPQFDFVFRFDCRRLSLLQGTCPDFRS
LLSDSLGGSCQGLDDAYASLLRKPERVLLLFDGVGDLKDPEGSPSASGSPPCREAPGLGA
TLGPLFQRELLNGCTLLLTGRPKERLPQYFPRVDTVLEVVGLSAEQASLCLARSLEGSAH
AEQQAKLIRASPYLFSHCGNPSLCRFICQAALETTVGELPSTLTGLFVTHLLQKAASVAT
DGRVSRCQGIAALAEVSWCLGQRCQRALLSGHFPSAAVKEFALKTGLMEEQRGVCAFSSF
AVQDFLLALHLALSQEMKGKKLTQYLGWGARVRKFLSSGGLVPRFLSGLLFSKDELSGRL
LFGKEGDLDAEKTVARKQRSLSRFIRKLPIRDFSPGKLLELLHCVHETEDPYLLKHVSLE
LGPDLSFLGFPLPPPDVSVLHSILRRSSKTFSVDLRGSCLPLEGLRKLVGLKSISKFRVS
LGEAVALWKHLWDVREREALQAAMEKFLVGPFRAKTTGDVDALLGLVELQRDMAEGEDAE
GSSARLIPAIAGLLRLEFSLGPSSGLEGFRKLADSLVAFSALQHLDLDSPDENEIGDKGV
GSLARVLPRLASLETLNLSRNKITDQGAELLAGALPALRSLKTLSLYENNIGDAGAERVA
EVLPQMCALRVLDLHCNQISAAGARCLTEHLRRCPGIRSLALWNPMIPHGVLDHLQQLDS
RIRRF
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atggaccttttcaagcagatcctgcccgaagtgcgggaggttttattaactgcttcggcc
ccgcagctccaaaccttcctggactccatgctgagcgaagggatcctctcccgggaatat
tatcagactttgctggatgaaaaagacaccgatgacctggcaaggaagctcgctctgacc
ctgcttgggaaacgggccgggccttcggatccccacagccgcctcccccccttgcagctt
tccggcaatgctagaggacctgctaagaacggagcggtctcactgaggactagaaactgg
accgccgctcccgccccagatgaggtgagccctggagggatcccaccggagaccccctgc
ctgcagagcgaggcccacccggcgtcgatggatgagatggaggaggcccctgcagtccaa
gcgtccgaggcggccagtgacgaccaggacaacccggaggtcttctacaccgtggagagg
gacgaaagcggagaagtcctctccctctgcgccgacatgggggaggcctacgacaaaatc
gctgccctggctgaatatctgctgaaagaccagcaagacgctccagcggacgaacatttt
gaaaggctcttttgggatgggggggctgccgaagggcccgggggctgcgcagaggccagg
agccgaggcccttcctcggacggccccgaagccaagcgcctgaggctggcccacccgccg
gctctgtgcattgtaaacagggaccccctcgccctcccgctgaaccccggccaggatggc
accgactctccaccagagttccacgtgcaaattttggtggccaccgtggggcctgcgggc
agatccccagaagcgcttggctcgccccgggctttctgcaaagggctgaaggagcatttc
cgcagagaatgccgttcggggcctgggcagcccctgggacccctgtacctggagagggac
ttggtgcagcaccacctggacagcaggggtgggaggagcgcagacctgaggcggtgccac
ctgggagagaagcgcaaggcctccgtggagagaagccgcttgttccagacggccaggaga
aaggagccgggcagcagggtcatcgtggtgctggggaaggccggcacggggaaaagcctg
ctggtccagaaggtctgcctggactgggccgagggcctcctgccccagttcgactttgtc
ttccggttcgactgccggaggctgagcctcctgcagggcacctgccccgacttcaggtcc
ctgctctcggactccctggggggctcctgccagggcctcgatgacgcctacgccagcctc
ctgcggaagccggaaagggtcctcctcctgtttgacggcgtgggagacctgaaggacccc
gagggctccccctccgcttccgggagcccgccctgcagggaagcccccggccttggcgcc
accttgggccccctcttccaacgggagctgctcaacggctgcaccctcctcctgaccggg
cggcccaaggagaggctcccccagtacttcccacgggtggacaccgtcctggaggtggtg
ggcctctccgcggagcaggcctcgctctgcctggcccgctctttggagggctctgcccac
gcggagcagcaggcgaagctgatcagggcctccccttacctcttcagccactgtggcaac
cccagcctctgccggttcatctgccaggctgcgcttgagaccacggtgggagagctgccc
tccaccctcaccggcctcttcgtcacccacctcctccagaaggcggcaagcgtggcaaca
gacggcagagtctcgaggtgccagggcatcgctgccttggccgaggtctcctggtgtctc
gggcagaggtgccaaagggccctgttgagcgggcacttcccttccgcagccgtgaaggag
tttgcgctgaaaacggggctcatggaggagcagcggggcgtctgcgccttctccagcttc
gcggtccaggatttcctgctggccctgcacctggctctctcccaagagatgaagggcaag
aagctcacccaatacctgggctggggggccagggtcaggaaattcctctcctcggggggc
ctggtgccccgtttcctgtctgggctgctcttctccaaggacgagctcagcggccgcctc
ctcttcggcaaggaaggcgacttggatgcggagaagacagtcgccaggaagcagaggagc
ctctccagattcatccggaaacttcccattcgggatttcagtccagggaaattgctggag
ctgctccactgcgtccatgagaccgaagacccctacctcttgaagcacgtgagcctggag
ctggggccggacctctctttcttgggcttcccgctgcccccgccagatgtcagcgtcctg
cactccatcctgaggaggtcctccaagaccttctcggtagacctgaggggcagctgcctt
cccctggaggggctcaggaagctggttggcctgaagagcatctccaagttcagggtctcc
ctgggggaagccgtggccctctggaagcacctgtgggacgtccgggagagggaagcactg
caggcggccatggagaagttcctggtggggcccttcagggccaagacgacgggggacgtg
gatgcccttctcggcctggtggagctgcagagagacatggcggaaggggaagacgctgag
ggttccagcgcccgccttattccagccatcgctgggctcctgcgactggaattcagcctc
gggcccagctctggcttggagggattccgaaagttggcggattctttggtcgccttctcg
gctcttcagcacttggacttggattcccctgatgagaacgaaatcggagacaaaggggtg
ggctccctcgcccgcgtccttcctcgcttggcgtctctggagaccttgaacttgtcccgg
aacaagatcaccgaccagggcgctgagctattggccggagccctccccgccctgcgttcg
ctgaagaccctcagcttgtacgaaaacaacattggggacgcgggagcggagcgcgtggca
gaggtgctgccccagatgtgtgcgttgcgggtgctggacctgcactgcaaccagatttct
gccgccggagcccggtgtctgacggagcacttgaggagatgccccggcatccggagcttg
gcgttgtggaacccaatgatccctcacggggttctggaccacctgcagcagctggattct
cggatcaggagattttag
DBGET
integrated database retrieval system
