Thamnophis sirtalis (common garter snake): 106551615
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Entry
106551615 CDS
T06107
Symbol
COL6A3
Name
(RefSeq) collagen alpha-3(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04510
Focal adhesion
tsr04512
ECM-receptor interaction
tsr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106551615 (COL6A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106551615 (COL6A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
106551615 (COL6A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tsr04147
]
106551615 (COL6A3)
00536 Glycosaminoglycan binding proteins [BR:
tsr00536
]
106551615 (COL6A3)
Exosome [BR:
tsr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
106551615 (COL6A3)
Glycosaminoglycan binding proteins [BR:
tsr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106551615 (COL6A3)
Hyaluronan
Extracellular matrix or blood plasma proteins
106551615 (COL6A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
VWA_3
vWA_SIBA-E
fn3
TarS_C2
Motif
Other DBs
NCBI-GeneID:
106551615
NCBI-ProteinID:
XP_013925225
UniProt:
A0A6I9YN87
LinkDB
All DBs
Position
Unknown
AA seq
2741 aa
AA seq
DB search
MRNYHHLIFATICGFILLGNHEADAQVKEITQESADIIFLIDGSKNGAVTFSAIRDFIAN
LIERLSVGAELIRVGVVMFSDEPRTVFPLNSYTQKVDILQAVKALSILGGEEANIGDALD
FVMQNHFTHSGGSRIEEGVPQILVLISNIESSDDIREGVLAMKQASIFSFCIGVQNADNA
ELQQIATDPSFVFTALDTRNLGELQDLLLPNIVGVAQRLILLDAPTILTEVVEVHKRDIV
FLIDGSSALGPAPFNAIRDFVAKIINRLEIGPDLIQVAVAQYADTVKPEFYFNSFQTKKD
IVTTVRKIKPMGGATLNTGSALLFVKNNFFTNAAGARIDEGVLPMLILITGGVSRDDVLQ
SKQEIERNGIVVLAVGARNADQSELEQIAYRVLTPPEFRTAALAPFIPVVVAFVKEDFSV
KLPEIPSTEVVTKRDIVFLLDGSANVGINNFAYVRDFLVNLVNSLDVGIDDVRIGLVQFS
ENPKTEFFLNSFLTKEDVLSRLRQLRLQGGSILNSGAALDFVRSNHFIEAGGSRKDSNVP
QVLVFLAAGPSADAFQDAANALARAKVLTFCVGVRNAKLAELQQIAFNPQIVYFKDEFSS
LPALPQEMISPLTTYVSGDVEDITIISTENKIDILFLIDGSMNMAGQFPVVREFVAQIIS
DLNVGPDAVRIALAQFSDNVNVEFNFDIPSKIEIVQKVKKMKMKGGRLLNIGAALDYAVK
YIFVRDAGSRIEKGVPQFLVLLVAGRSDDTVDESADTLKQTGVIPFVIQTKTSDPVELER
IVYAPQFILKVDTISRLGDIQHEIVNLLKTIQLKPQADTKKDVVFLIDGSQFALSEFPSI
REFIERLVNNMNVGSDATRVAVIQFSDNPRVEFLLNAYSTKEEVLAAVRRFNPRGGRQVN
LGSALEYVSKNIFTRPSGSRIEEGAPQFLILLYSHRPHDDTENPVHQIKEIGVAPLPIGK
NVDPEEMAKIALSPDYAFQVSTYQDLPSLEQKMLTHITTLTTQQIRKIITDTSRPPVIDS
EAMDIVFLVDSSDDVRSDGLAHIRDFIFRIVQKLDIQPSRVRIAVVQFSNEVFPEFDLKA
YPTKESVLQAIRRLRHKGGSPRNVGKALDHVMKTLFIRSAGSRREDGVPQKLILLLGGNS
QDDISRPSILVQNSGISTLGVGTRQIDSAELQRITSNPQTAFIVRDFTELPVIEKRIIAG
IFTTPVPTELPTEVIPVDKKQGDIVFLLDSSINFGRDNFPNVVEFIHDLIDAIYDEGDSI
RVGLVQYNSDVSDEFFLRDFSDKEHILEAVKKITYKGGRIANTGAGVKHIQAKHFVKEAG
SRKDQNVPQIALIITAGKPEDDGESAVLGLSQSGVKVFAVGVKNIDQNEITKLSSDTTTA
FRASTPQVLSELNEAVLVTLNDVMREQLCRGVVEVSKDCNLDVILGFDVSNTVQGQSIFS
VQSMLESSIEDILNRISQMQKISCTPNQAPTVRVALLAQTPSGIVEAFDFSEYQPELFEK
FQALRNDGPYVLTADTLKSYQNKFKTAPTGSTKVVIHLTDGIDGAMGPLATASMSLKKDG
VKALILVGLDRVSNFEEAMKLEFGRGFTYNKPLLVNQLDLDFEVTEQLDNIAERSCCGVP
CKCSGQRGDRGFPGTVGPKGIPGENGYRGYPGDEGGLGERGPPGINGTQGFQGCPGERGM
KGGRGFPGEKGEFGENGLDGIDGEEGDRGFPGVPGERGSLGRLGGRGNKGEIGDPGDHGL
RGDPGTFGTDSTDRGPKGEKGELGPAGELGRDGPRGDAGEAGRDGSLGKRGPPGIKGNKG
DLGSPGFNGEQGIKGPQGPPGTTGIPGLQGEPGLPGQRGAGGPAGGVGERGRSGPLGKKG
EAGEPGPKGPIGPPGPRGEMGDDGRDGVGKEGPKGRTGQPGFPGYPGSRGVPGDHGDDGK
PGPKGSSGERGRSGEPGQGGQKGESGYPGPPGFMGSKGESRDHCTLIRNIKDKCPCCYGP
KECPVYPTELAFALDTAAGGNADTFNRMKDTVVSIVNNITIAESNCPRGARVALVTYNSE
VTTEIRFADSRKKKELVKLIKDLQFVQTSKQRSLETAMGFVARNTFKRARSGFLMRKVAV
FFTNGPTKASPQLNEAVLRLYISGVVPVFLTNREDKALINALQINNTGGQALAFTGGAGQ
LAATIRKVFTCHICLDVCDPDPSCGIPSGSFGRDRRAAPTDVDIDIAFILDSSESTTQMQ
FKEIKSYISYIVNQLETSSDPKLSQHHARVAIVQHAPFEFQSNSSISPVKVELSLTDYGP
RDKLTDFIQNQMSQLYGTRAVATAVDYTMRHIFESAPNPRDHKVIVLMMTGGIEKEELEH
LQKVIVEAKCKGYFFVIIGIGRNINIPSIYSLASEPNDVFFKYVDEASQLHEEPLLRFGS
LLPSFINSENSFYLSPDIRKKCDLFQGDQPIKKFGQKQLSIPNNVTVTPAVTEKSKVIKH
NGEVQITDITENSAKLHWMIPEPQNVYVYHITVSSAHDHSIVLKLNLTNNERVIGDLQSG
QKYHVAITGYHNAQAKATYRGTFNTKSMPAAKIPSAGAAGAAGAAGAAGAAGTAGTAGAA
AATNIMVNTEPLNVPEKDPCLLDLDMGTQCKEYQVKWYFDYKNKICTQVWYGGCNGNANR
FETEADCISRCMKPSDEKDTQLPFLEKSHLSGTGICQLKKEDGTCRDFVLKWYFDPKTGS
CARFWYGGCGGNENRFNTQKDCEKVCVSAHIKSGVVTMIGT
NT seq
8226 nt
NT seq
+upstream
nt +downstream
nt
atgaggaattatcaccatttgatttttgcaacaatctgtggttttatactcttaggcaat
catgaggctgatgcacaggttaaggaaattacacaagaatctgctgacattattttcctt
attgatggatcaaagaacggcgctgtcactttctcagccattcgtgatttcattgcaaat
ttaattgaaagactctcagttggagctgagctcatacgcgttggggtggttatgtttagt
gatgaacccaggactgtattccccttgaacagctacacccaaaaagttgatattctacag
gcagtgaaggcccttagcattcttggtggcgaggaagctaatattggagacgctcttgat
tttgtcatgcaaaaccacttcacccactcaggaggcagcagaatagaggaaggtgtgcca
cagattttagtgctcataagtaacattgagtctagtgatgacataagagaaggagtttta
gccatgaagcaagctagtatattctcattttgcattggggtccaaaatgctgacaatgca
gagcttcagcaaattgctactgatccaagcttcgtatttactgccctggatacacgtaac
cttggcgaacttcaagatctcttactgccaaacattgttggagtggcccaaaggctcatt
ttgttagatgccccaaccattcttacagaagttgttgaagtccataagagagacatagtc
ttcctgatagatggttcttctgcattgggacctgccccctttaatgcaattcgtgatttc
gtggccaaaatcatcaacagactggaaattggaccagatctcattcaagttgcagtggca
caatatgcagatactgtaaaaccagaattttattttaatagcttccagacaaaaaaagat
attgtcaccactgttaggaaaattaaaccaatgggtggtgccacacttaacactggctca
gcattgctgtttgttaaaaacaacttcttcaccaatgccgctggggccaggattgatgaa
ggtgtccttcccatgttgattctgatcactgggggtgtgtccagggatgatgttctccaa
tcaaaacaagaaattgaaaggaatggcatcgtggttcttgctgtgggagcccgaaatgct
gatcaaagtgaactcgaacaaattgcctacagggttttaacccccccagaattccgcaca
gctgcactagcacccttcattcctgttgttgtggcttttgtaaaagaagacttttctgta
aaacttccggaaataccatcaacagaagttgtaaccaaaagagatatcgtctttcttttg
gatggatcagccaacgttggaattaacaacttcgcatatgtccgtgactttcttgtgaac
ctagttaattcccttgatgttggaattgatgatgtacgaatcggcctagtacaatttagt
gagaaccccaaaacagaattctttttaaactccttcctaaccaaggaagatgtcctttct
cgtctgaggcagttgagactgcaaggggggtcaattctgaattcaggagctgcactagat
tttgtgcgctccaatcacttcattgaagcaggtgggagcaggaaagattcgaatgtccct
caggtgctagtcttccttgcggcagggccatctgctgatgccttccaagatgccgccaat
gccttagctcgtgcgaaagtgctcaccttttgtgttggggttaggaacgccaaactagca
gaacttcagcagattgcatttaatccacaaatagtatattttaaggatgaattcagctct
ctgccagctttaccacaggaaatgattagtccactaacaacatatgttagtggagatgtg
gaagacattacaatcatatcaacagaaaacaagattgatattttatttttaattgatggc
tcaatgaacatggctggccagtttcctgttgttcgagagtttgtggcccaaattatttct
gacctgaatgtggggccagatgctgtacgaatagctctagcacaatttagtgacaatgta
aatgtggagttcaactttgacatcccatccaagatagaaatcgttcagaaagtgaaaaag
atgaagatgaaaggaggaaggctactgaacattggagctgcactagattatgctgtaaaa
tacatctttgtaagagatgctgggagcaggattgaaaaaggcgtgccacaattcctggtt
cttcttgtggctgggagatcagatgatactgtggatgaaagtgctgataccctgaaacaa
actggtgtgattccttttgttatccaaaccaagacctcggatccagttgaattagaaaga
atagtttatgcccctcagttcattctaaaggttgataccatttctcgacttggagacata
caacatgaaatagtcaatctgttgaaaaccatacaacttaaacctcaagcagatacaaag
aaagacgtcgttttccttattgatggctctcagtttgcactgtctgaattcccttcaatt
cgtgaatttatcgaacggcttgtaaacaatatgaatgtgggttcagatgctactcgagta
gctgtaattcaattcagtgataatcccagagttgaatttttgctgaatgcatattctacc
aaggaggaggtgctagctgcagtgagaagatttaatcccagaggtgggaggcaagtgaac
cttggttctgccctagaatatgtgtcaaagaatatctttacaagaccttctgggagccgc
atagaggaaggagcacctcagtttttaatccttctttattcccaccgacctcatgatgat
acagagaacccggtacaccagatcaaagagattggtgtggctccccttcctattggaaag
aatgtggatcctgaggaaatggccaaaatagcacttagtcctgattatgcatttcaagta
tcaacttaccaagatctacctagtctggaacagaaaatgttaacccatattacaacatta
actacccagcagatacggaaaatcattactgatacaagtcgccctccagtcattgacagt
gaagcaatggacatcgtcttccttgtcgacagctctgatgatgtcagatcagatggactt
gctcacattcgtgatttcattttccggattgtccagaaactagatatccaaccaagcaga
gtgagaattgctgttgtccagtttagcaatgaagtgtttcccgagttcgacttaaaagcc
tacccgaccaaagagagtgtgctacaagccatacgacgcttaaggcacaaaggtggttct
ccccggaatgttgggaaagctctggaccatgtcatgaagactctctttatcagatcagca
ggaagtaggcgagaagatggagtcccccagaaattaattctcttgcttggagggaactcc
caggatgatatcagcaggccatctattctggtgcagaactctgggattagtactctggga
gttggaacaagacaaatagacagtgcggaattgcaaaggatcaccagcaatccccaaact
gcatttattgtgagagattttactgagctcccagtaatagaaaaacggatcattgcagga
attttcacaacaccagtgccaactgaactacctacagaggttatcccagttgataaaaaa
caaggtgatattgtcttcttgctggatagctctatcaattttgggagagacaatttcccc
aatgttgttgaatttatacatgacttaatcgatgctatttatgatgaaggcgattccatt
cgagttggtttagtacaatacaactctgacgtgagtgatgaattctttctgagggatttc
tctgacaaagagcatatcttagaagcagtgaagaagataacgtacaaaggaggcagaatt
gccaatacaggagcaggtgtcaagcatatccaagcaaaacattttgtgaaggaggctggc
agcaggaaagaccagaatgtccctcagattgctctcattataacagcaggcaagccagaa
gatgatggagagtcagcagtcttagggttgtctcagtcgggtgtcaaggtctttgcagtt
ggtgtgaaaaacattgaccagaatgaaattactaagctctccagtgacaccacaacagct
tttagggcttcaactccccaggtcctctcggagctcaatgaggctgttctggtgaccctg
aatgatgtcatgagagaacaattatgtcgtggtgtggtggaagtctctaaagattgcaat
ctggatgtcatacttggatttgatgtctcaaataccgtacaagggcaaagcatattcagt
gtacaaagtatgctggaatcatcaattgaagatattctgaacagaatcagtcaaatgcag
aaaattagttgtactcccaaccaggcacccacagtgcgtgtagcacttctggcacagact
ccctctggaattgtagaagcctttgatttctcagagtatcagccggagttgtttgaaaag
ttccaagccttgcgaaatgatggaccatatgtgctcacagcagacaccctcaagtcttac
cagaataaatttaaaacagctcctactggaagtacaaaggtggtgatccacctaactgat
ggcattgatggtgctatgggaccactggcaactgcatcaatgagtctaaagaaagacggt
gtcaaggctcttattcttgttgggttggaccgagtatctaattttgaagaagcaatgaaa
ctggaatttggacgtggctttacttataataaacctctcctagtgaatcagctggattta
gacttcgaagtgacagagcaattggacaatattgcagaaagatcatgttgtggagtccca
tgcaaatgttccggacaacggggagacagaggatttccaggcacagttggaccaaaggga
attccaggggaaaatggctatagaggctatccaggagatgaaggtggactgggtgaacgt
ggacctcctgggataaatggaacccaaggtttccaaggctgtccaggtgaaaggggaatg
aaggggggccgtggattcccaggagaaaagggcgaatttggggaaaatggacttgatgga
atagacggagaagagggagatagaggctttccaggtgttcctggggagagggggagcctt
ggtagactgggtggcagaggaaacaaaggagaaataggagacccaggtgaccatggactt
cgaggtgatccgggtacttttggaaccgatagcactgacagaggacccaaaggagaaaag
ggagaacttggaccagcgggagaacttggaagagatggaccacggggtgacgcaggagaa
gctggaagagatggatcacttggcaaaagaggaccacctggtatcaaaggaaataaaggt
gaccttggctcaccaggatttaatggagaacaaggaattaaaggcccccagggaccacct
ggcacaactggaatccctggtcttcaaggagagcctggcctccctggccaaaggggtgct
ggtggtccagctggaggtgttggggaacgtggtaggtctggtcctcttggtaaaaagggt
gaagctggtgagcctggtccaaaggggcccattggtcctcctggcccccgaggagaaatg
ggagatgatggacgagatggagttggcaaggaaggacctaaaggcagaaccggacaaccc
ggtttcccaggatacccaggatcacggggcgtacctggagatcacggtgatgatggtaaa
cctggacccaaaggaagcagtggtgaacggggacgttcaggggaacctggccaaggtggt
cagaaaggagagagtggatatccaggaccacctggatttatgggtagtaaaggagagtct
agagaccactgtacacttatacgcaatatcaaagataaatgcccttgctgttatggtcca
aaagaatgtcctgtttatccaactgaattggcctttgctcttgatactgctgctggtgga
aatgcagacactttcaacagaatgaaggacacagtagtgtcaattgttaacaatatcaca
attgcagaaagcaactgccccagaggtgcccgagtagcactggttacatacaacagtgaa
gttaccactgagatacgttttgctgactccagaaagaagaaggagttggtaaaactaatc
aaggacctccaatttgttcagacatccaaacaacgtagcttagaaacagccatgggattt
gtggctaggaatactttcaagcgtgcacgtagtggcttccttatgaggaaagtggctgtg
ttcttcaccaatgggcccacaaaagcatctccacagttgaatgaagcagtactaagactc
tacatttctggagttgtacctgtattccttacaaacagagaggacaaggcccttatcaat
gcattacagataaacaacactggtggacaggctttagcatttactggtggtgctggtcaa
ctggctgcaactattaggaaagtgttcacatgccatatttgtctagatgtatgtgatcct
gatcccagctgtggtatcccgagcggtagctttggcagagacagacgggcagcgcctaca
gatgttgacattgatatagcattcatcctggatagctctgagagcaccactcaaatgcag
ttcaaagaaattaagagctacatttcatatattgtaaaccaactggaaactagttctgat
cccaagttatctcaacaccatgccagggttgccattgtccaacatgctccctttgagttt
caatcaaactcaagcatatctcctgtcaaagttgaattgtcactgacagattatggccca
agggacaaattaacagatttcattcaaaaccaaatgtcacaactatatggaacacgggct
gtggcaactgcagtagactatacaatgaggcatatttttgagagtgcaccaaatcccaga
gatcacaaagtcattgttttgatgatgacaggaggcattgaaaaggaagaacttgaacac
cttcagaaagttattgtagaagctaaatgtaaaggatatttttttgtcattattggcatt
ggtaggaatattaatattccaagcatctacagcttggcaagtgagcctaatgatgtcttc
ttcaaatatgttgatgaggcatcacaacttcatgaagaaccattgctacgttttggaagc
ctgttgccgtccttcatcaacagtgaaaattccttttacttgtctccagatatcaggaaa
aaatgtgatttgttccagggtgaccagccaatcaaaaaatttggccaaaaacaactatct
attccaaataatgttactgtcacacctgctgtaacagaaaaatcaaaagtgattaaacat
aatggagaagtccaaataactgatatcactgaaaacagtgctaagctgcattggatgatt
cctgagcctcagaatgtctatgtctatcacatcacagtctcctcagcacatgaccactcc
atagttttaaagcttaatttaactaacaatgaaagagtcattggagatcttcagagtgga
caaaagtatcatgttgctatcacaggttatcataatgcccaggccaaagctacttatagg
ggaacatttaatacaaagagcatgccagcagccaagatcccttcagcaggagcagcagga
gcagcaggagcagcaggagcagcaggagcagcaggaacagcaggaacagcaggagcagca
gcagcaaccaatataatggtgaacactgaacctttgaatgtccctgaaaaagatccttgc
ttactggaccttgacatgggcacgcagtgcaaggagtatcaggttaagtggtactttgac
tacaaaaacaagatctgcacccaggtttggtatggtgggtgtaacggtaatgccaataga
tttgagacagaagctgactgcattagcagatgtatgaagccatcagatgagaaagacacg
cagcttcctttccttgagaaaagtcatttgtcaggcacaggtatctgtcagttgaagaaa
gaagatggtacttgcagggattttgttctaaaatggtattttgatccaaaaaccggaagt
tgtgctagattctggtatggtggctgtggtggaaatgaaaatagatttaacacacaaaaa
gactgtgaaaaagtctgtgtttcagctcacatcaagtctggtgttgtgacaatgattgga
acttaa
DBGET
integrated database retrieval system
