Thamnophis sirtalis (common garter snake): 106551756
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Entry
106551756 CDS
T06107
Symbol
TRIM56
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM56
KO
K12026
tripartite motif-containing protein 56 [EC:
2.3.2.27
]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tsr04121
]
106551756 (TRIM56)
Enzymes [BR:
tsr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106551756 (TRIM56)
Ubiquitin system [BR:
tsr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
106551756 (TRIM56)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-B_box
zf-RING_UBOX
zf-C3HC4
zf-RING_5
zf-C3HC4_2
PQQ_2
zf-RING_2
zf-C3HC4_4
Phytase-like
Motif
Other DBs
NCBI-GeneID:
106551756
NCBI-ProteinID:
XP_013925379
UniProt:
A0A6I9YN94
LinkDB
All DBs
Position
Unknown
AA seq
687 aa
AA seq
DB search
MAADASSLWETLAGSFLTCNICLGHYCQPKILPCLHSYCQDCLKTLQGGAKRELRCPECR
EPVPLPAGIEGLKTNFFINGLLDLVPPVEKARVTCSLCPLIGQDASSVAVSHCIDCADHL
CQACASGHRCSRLTHKHLVVDMEAYHSGKYNEEIRKRQAARCKEHKGENLQYFCIPCAAA
LCRECRLGHHLEHPCLSLSEAAKARRPVITGLLAGVAEKVQLIARGKASLEEEIKEMEVW
NTNIRSVVEQTCAKAVEQLLSHKGQVLAQLSSYLEERKVASRLLLSELGFQEQVASSTVA
FAQKVLSLGQEEEIVSLEQMISERLRQLQGFSWEALAVQVPKLRIQPNLLCGCNLFHLEF
HEKPTAAAPEGYAQVARKKAKQKPPQGAEVGEACRQEQAPSGGSSGLLESGGPPSPNGPE
VPRLTPKPVFFCSFWVKVPTDKKQPQITGLCPFGSGEILLADEQNKKLKRFSVQGEFKGT
IPVPGDVAPFSVAAVGNKVVFTAASQLYVLNETGGIVWQKALKGGQASHAVTTCDGNCVV
VSVAGHLEVFNMKGQLLERIVPEGSHDRSLVFLGRWKEGFVASDWYRRSVVLLGRKGDLV
TEYQEEQLKESQPGSVCADAPGIIYVVLRELNKVVAFSEAGEVLGSFLTTENNIFKPRMV
TIAGDGHFVAALTNGTVHVFKIKYQGK
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggctgccgacgcatcctccctctgggagacccttgccggcagcttcctgacttgcaac
atttgcctgggacactattgccagcccaaaatcttaccctgcctccacagctactgccag
gactgtctgaagacgctgcagggtggggcgaagcgggagctgcggtgccctgaatgccgc
gagccggtgcctctcccggccggcattgaaggtttgaagaccaacttcttcatcaatggc
ctcctggacttggtgcctccagtcgagaaggccagggtcacctgcagcctgtgcccgctc
attgggcaagatgccagctctgtcgccgtgtctcactgcatcgattgtgccgaccacctg
tgtcaggcctgtgccagtgggcaccgttgctcccggcttacccacaaacacctcgtggtg
gacatggaggcttaccactctgggaagtacaacgaggagatccggaagcgccaggcggca
cgctgcaaagagcacaagggcgaaaacctgcagtatttctgcattccctgcgctgctgcc
ctctgccgggagtgccgcctgggccatcacctggagcacccgtgcctgtctctgtcggag
gccgccaaagcccgccgtcccgtcatcacaggcctcttggctggggtggcggagaaggtg
cagctcatcgcccggggaaaggccagcctggaggaggagataaaggagatggaggtgtgg
aacacgaacatccgtagcgtggtggagcagacgtgcgccaaggccgtggaacagctgctc
agccacaagggacaggtcctggcccaactctccagctacctggaggagcggaaggtggcc
tctcggttgctgctctctgagctgggcttccaggagcaggtggcctccagcacggtggcc
ttcgcccagaaggtgctgagcctgggccaagaggaggagatcgtctccttggagcagatg
atctcggagaggctgaggcagctgcagggcttctcttgggaggccctcgccgtgcaggtc
cccaagctccgcatccagccgaacctcctctgcggctgcaacctcttccacctggagttc
cacgagaagcccacggccgccgccccggagggctacgcccaggtggccaggaagaaagca
aagcagaagccgccccagggagcagaagtgggggaggcctgcaggcaggaacaggctccc
agtgggggaagctctgggctgctggaatccggtgggcctccttcccccaacggaccagag
gtcccccgcctgacccccaagcccgtctttttctgcagcttctgggtaaaagtcccgacg
gacaagaagcagccacaaatcacgggcttgtgcccgttcggctccggagaaatcctgctg
gccgacgagcagaacaagaagttgaagcgcttctctgtgcagggcgagttcaagggcacg
atcccggtgccgggcgacgtggccccattcagcgtagctgccgtgggcaacaaggtggtc
ttcaccgctgcgtctcagctctacgtcttaaatgaaacgggagggattgtgtggcaaaag
gctctcaagggggggcaggccagccacgcggtcaccacctgtgacgggaactgcgtggtg
gtgtccgtggcaggacatctggaggtcttcaacatgaaagggcagctcctggagaggatt
gtgccagagggctcccacgaccgatccctggtattcctgggcaggtggaaagagggattc
gtggcatccgactggtaccggcgtagtgtggtgctgctcggcaggaagggggatctggtg
accgaataccaggaagagcagttgaaggagtctcagccgggcagcgtctgcgctgacgcc
cccgggatcatctacgtggtgcttcgggagctgaacaaggtcgtggctttttcggaggcc
ggggaagtcctgggatcctttctcacaacagagaacaacatcttcaagccacgcatggtc
accattgccggggacgggcattttgtggccgctctcaccaacggcaccgtccacgtcttt
aagatcaagtaccagggcaagtga
DBGET
integrated database retrieval system
