KEGG   Thamnophis sirtalis (common garter snake): 106551885
Entry
106551885         CDS       T06107                                 
Symbol
HLTF
Name
(RefSeq) helicase-like transcription factor
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
tsr  Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:tsr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:tsr04121]
    106551885 (HLTF)
   03400 DNA repair and recombination proteins [BR:tsr03400]
    106551885 (HLTF)
Enzymes [BR:tsr01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     106551885 (HLTF)
Ubiquitin system [BR:tsr04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    106551885 (HLTF)
DNA repair and recombination proteins [BR:tsr03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    106551885 (HLTF)
SSDB
Motif
Pfam: SNF2-rel_dom HIRAN Helicase_C zf-C3HC4_2 zf-C3HC4 zf-C3HC4_3 zf-RING_UBOX DEAD zf-RING_2 zf-RING_5 Prok-RING_4 zf-C3HC4_4 ResIII RING_XB3-XBAT31 zf-ANAPC11 zf-Nse HDA2-3 ACT_3 zf-rbx1 RIF2_ASCE
Other DBs
NCBI-GeneID: 106551885
NCBI-ProteinID: XP_013925523
UniProt: A0A6I9YMA5
LinkDB
Position
Unknown
AA seq 934 aa
MAWRFLRDFSWELDPALYGDKHYNVFTREFYPSVEDIMGIVTSGIDEDIDSAVLFGTLQG
NVVGLRYYTGVVNNNEMVALQREPNNPYDKNAVKVNNVNGDQVGHIKKELAACLAYIMDN
KLAVVEGVVPRGANNTFTMPVQLSFWGKEENKQVVLERLKMHGLKLAPPGKFSEFGFETG
MTSGRGKTRYNAPSHGAIQMTTEQLKTEFDKLFEDLKEEDKTCEMEAAKAVMTPLLPHQK
QALAWMILRENNNDLPPFWEERNDFFYNTIIHFAEKNRPENVLGGILADDMGLGKTLTMI
AVILTNFHNGKPLPLEKKIDQMEEDCGLQQNASNSKEESDSFPSQSSRSYPKRVTGKKSK
GTISCDTEPEQEVAEQIKTKGKKPKSRARKRKLDDVPVQPKKNEVDNVRGTLIICPLSVL
SNWIDQLEQHVDPNIQLNTYVYYGSERNKDLIVLSKQDIVLTTYNVLATDYGGRDNSPLH
KLKWLRVVLDEGHTIRNPNAQQTKAVLDLNAQRRWILTGTPIQNSLKDLWSLLSFLKLKP
FTDRLWWHRTIQRPVTMGDERGLKRLQSLIKSITLRRTKTSKVNGKPVLKLPERKVFIQH
ITLTDEESAVYHSVKNETKAALSRYFTEGSVLAHYADVLGALLRLRQLCCHPSLCSSVSQ
SSSLESTSEEFRDMLIQKMKLVLSSGSDEECAICLDSLVDPIITHCAHVFCKTCICEVIQ
REKDYAKCPLCRKEVSAEHLIECHLEETHDEKNKQQWPSSSKVNALMHALIELRKQNPAI
KSLVVSQFTKFLSVIETSLKESGFVFVRFDGSMNQKQRVEAIQQFQNNETGSPTIMLLSL
KAGGVGLNLTAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQDVIITKFIIKNSVEENMLK
IQNKKRELAAGAFGTKKPSTGETKMNEIRTLMDM
NT seq 2805 nt   +upstreamnt  +downstreamnt
atggcttggaggtttctgagagacttctcatgggaattggatcctgctttgtatggagac
aagcattacaatgtttttacccgcgaattttatcccagcgtagaagatattatgggaatt
gttacttcagggattgatgaagatatagattcagcagtgttatttggaactttgcaagga
aatgtggttggtttacggtattatactggtgtggtcaataataatgaaatggtggctctc
cagcgagaacctaataatccatatgataagaatgctgtaaaagtaaacaatgtgaatggt
gatcaagtaggccatataaaaaaagaactggcagcttgcttggcttatatcatggacaac
aaattggcagtagtggaaggggttgttcctcgtggagcaaataatactttcactatgcca
gtgcaattgagcttttggggaaaagaagagaataagcaagtggttctagaaagactaaaa
atgcatggattaaagttagcacctccaggaaaattttcagagtttggttttgagactggc
atgacatctggcagaggtaaaacacgttacaatgctccaagccatggtgctatccaaatg
acaactgaacagcttaaaaccgaatttgacaaactttttgaagacctgaaagaagaagat
aagacctgtgaaatggaagcagcaaaggctgttatgactcctttactgccacaccagaag
caagctttagcttggatgattttgcgagagaacaataacgatcttcctccgttttgggaa
gaacgaaatgacttcttctacaatacaattatacattttgctgaaaaaaatagaccagaa
aatgtgctcggaggaatattggcagatgatatgggactgggcaaaacactgactatgatt
gcagtaattcttaccaacttccataatgggaagcctcttcctcttgaaaagaaaattgat
caaatggaagaggattgtggcttgcagcagaatgcttctaattcaaaagaggaaagtgac
tcttttccctcacaatcttccaggtcctatccaaaaagagttactggcaagaaatcaaaa
ggcacaataagctgcgacacagaacctgagcaggaagttgcagaacaaataaaaactaaa
ggaaaaaaaccaaaatcaagagcaaggaaaagaaaactagatgatgttcctgtacaacca
aagaaaaatgaagttgataatgttagaggaacgctgataatttgtcctctctccgtccta
agtaactggattgaccaacttgaacaacatgttgatccaaatattcaattgaacacttat
gtttactatggctcagaacggaacaaagatctgatagtactttccaagcaggatatcgtc
ttaacaacttacaatgttttagctactgactacgggggcagagataacagtcctttacat
aaattaaaatggctgagagttgtgttggatgaaggtcatacaatacgaaatccaaatgct
caacagacaaaagctgttctagatttgaatgcacaaagaagatggatcttgacaggcaca
cctattcagaattctttaaaggacttgtggtctctcctttccttcttaaagttgaagcct
tttacagacagattgtggtggcacagaacaatccagcggcctgtcactatgggagatgaa
agagggcttaagcgtttacaatctctaattaagagcattacgcttcgaagaactaaaacg
agcaaagttaatgggaagccagttttgaagctcccagagcgtaaagtattcattcagcat
attacacttacagatgaagagagtgctgtttatcactctgtgaaaaatgagactaaagct
gctctaagcaggtattttactgagggaagtgttttggcccactatgctgatgttcttggt
gctttgctcagattgagacaattgtgctgtcacccatctctctgttccagtgtctctcaa
tccagttctctagaaagtacttctgaagaattccgtgacatgttaatacagaagatgaag
ttagttctaagctctggttcagacgaagaatgtgctatttgcttggattcactggttgat
cccataataacccactgtgcccatgtgttctgtaagacctgcatttgtgaagtcatccaa
agagaaaaggattatgcaaaatgtcctctttgtagaaaggaagtttcagcagaacattta
atagaatgccatttggaggaaactcatgatgaaaaaaataaacagcaatggccatctagt
tcaaaggtcaatgcattgatgcatgctttgattgagctaagaaaacaaaatccagctatt
aagagtttagttgtttcacagttcacaaaatttctgtctgtaatagaaacttcactaaag
gaatctggatttgtctttgtccgctttgatgggtctatgaaccagaaacaaagagtagaa
gcaattcagcagttccaaaacaatgaaactgggtctccaactataatgttgttatcattg
aaagcgggtggagttggtttgaatctgacagcagcttcccgggtatttttaatggatcct
gcttggaatcctgctgcagaggaccagtgttttgacagatgtcatagacttgggcagaaa
caggatgttatcatcaccaagttcatcataaagaattctgtggaagaaaatatgcttaaa
atccagaacaagaagagagaacttgcagctggagcctttggaaccaaaaaaccttctact
ggtgaaacaaaaatgaatgaaatcaggactctgatggatatgtaa

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