Thamnophis sirtalis (common garter snake): 106552309
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Entry
106552309 CDS
T06107
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106552309 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106552309 (EDC4)
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106552309 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
106552309 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
CelTOS
Motif
Other DBs
NCBI-GeneID:
106552309
NCBI-ProteinID:
XP_013926027
UniProt:
A0A6I9YP16
LinkDB
All DBs
Position
Unknown
AA seq
1401 aa
AA seq
DB search
MASASIDIEDATQHLRDILKLDRPGGSVNENQRTSSSYNGDLNGLLVPDPTAAGDGSSST
KPVPQTVPLGALQDKQVICLSGDDNSTCMVILAKDVEIVASSDSSITSKARGSNKVKIQP
VAKYDWEQKYYYGNLIAVSNTYLAYAIRGASSGSAMVRVLSVSTAERTLLKGFTRGVADL
AFAHLNSNQLACLDEAGNLFVWCLSMENGKIQEEILVNIKRPDGTPLNNFRRIIWCPFIP
DENEESCEEGSQTLALLHEDRAEVCDLDIIRANHSSWPVEVTNIKEGYIVVKGHSTRLSE
GALSPDGTVLATASHDGYVKFWQIYIDGQDEPSRCLHEWKPHEGRPLSCLLFCDNHKKQD
PEVPFWRFLITGADQNQELKMWCTVSWTCLQTIQFSPDIFSSVSVPPSLKVCLDLSAEYL
ILSDVQRKVLYVMELVQNQEEGKAYFSSISEFLLTHPVLSFGIQMVSRCRLRHTEVLSGE
EESDGISAEGVQGSGASGSAAGVLIKLFCVHTKALQDVQIRFQPLHSPDTATSVPPHGSR
EDFAFPDHLADIGMEGRGSEKGSIHGSQPDLRRISELSVPVDFLPPSNDTKPKLMTPDAF
MTPSTSLQQITGSPGSSISSLTAVTPMSTSSVGEPPLPSLFLPTVVKRIPAVLKLVTQLL
SEPGFHTDLSEGSCKECYKRINFFVFPLKVSPGNPPPLALEQEEVEPLVVPQSSPTRERS
PDVISSASTAMSQDIPEIASETLQRSFGAAPSGLPVEILDANHHTDSMASAASALHLLSP
RNRHSSEPSHHSLDMTPNEVDMLTAPSLLEMALPQENVALDSGVSQPWPAAPDITRETRN
SMADSPRNEVEEKHKSSCHRHTYRLLQHDSQDASAEQSDHDDEVVSLATTSGGFTTKVTA
QRLPVKDWKAKVSPRASPKLKRKGKKDDRDAPPSPRSFDQQSAPEYQEELMSLLRTQQRE
IAEQRQNQMDLMQRLADHLDAVQSSLMGHIERVIDSQQEQEQRRLDQALAEGQQRSGQLQ
EHLSQQLSQSLSTAACNRLERTIREEMKKTVPPCVSKSLDPITGQLSNTIANKLTAIEGT
LKENIAKLVKSKNLTDTIARAATDTLQVPMQTAFREAFQSIVLPAFEKSCQSMFQQINDT
FKQGTQEYILQLEAQLKTKKAREQEARDSLVGQLRQMVNSFQSATDQMTSAITASVHSEI
QHQLHVIVGNMQESILTQVQRVIKGEVSTAMKEQQAAVTSSIMQAMRSAAGTPIPATHLD
FQSQQAHMLQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPQQVFGQDPCPLSQPVLLS
LIQQLSSDLGSRTELKLNYLEEAVMHLDHSDPITRDHMGSVMNQVRQKLFQFLQVEPHNN
LSKPARRLMIMLQGLVTHNMA
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atggcctccgcgagcatcgacatcgaggacgccactcaacacctgcgcgacatcctcaag
ctggatcggcccggcgggtcagtgaatgaaaaccagagaacatccagttcctataatggc
gacctgaatggtcttctggtgccagatcccactgcagctggagatggctcgtcctcaact
aagcctgtaccacaaaccgttcctcttggagcgctacaagacaagcaggttatctgcctc
tctggagatgataattccacctgcatggtgattctcgcaaaagatgttgaaatagtggcc
agcagtgattccagcatcaccagtaaagccagaggaagcaataaggttaaaatccagcca
gtagccaagtatgactgggagcagaaatattactatggcaacctcattgctgtctcaaat
acctacctggcttatgctattcgaggtgccagcagtggctcggccatggtgcgtgttctg
agtgtcagcacagctgagcggacgcttctgaaaggcttcactagaggtgtggcagatctg
gcttttgctcacctcaactccaaccagttggcctgcctggatgaagctggcaacttgttt
gtctggtgtctgtctatggagaatggaaaaatccaagaagagatcttggtgaacatcaaa
cgacccgatgggacacctctgaacaactttcggaggataatctggtgtcccttcatccct
gatgagaatgaggagagctgtgaagaaggcagccagactctggcattgctgcatgaagat
cgagctgaagtctgcgaccttgacataatccgagccaaccatagttcatggccagtggaa
gtaaccaacatcaaggaaggctacattgtggtgaagggtcatagcacgcgcctgagtgag
ggagcgctttctcctgatggaactgtcttggctactgcaagccatgatggctacgtcaaa
ttctggcagatttacatagatggacaagatgagccaagtcggtgcctccatgaatggaaa
cctcatgagggcaggcctctttcctgtttgctcttctgtgacaaccataagaaacaagac
ccagaggttcctttttggaggtttctcatcaccggagccgatcagaatcaagagctgaaa
atgtggtgcaccgtctcctggacctgcctccagactattcagttttctccagatatattt
agctctgtgagcgtccctcccagtctgaaggtctgcctggatctctcagccgagtaccta
attttgagtgatgtgcaaaggaaggtcttatatgtgatggaacttgtccagaaccaagaa
gagggcaaagcttacttcagctccatctcagagttcctgttgactcacccagtcctgagc
tttggcatccagatggtcagccgctgccgactgaggcataccgaggtcctctcaggagaa
gaagagagtgatggcatcagtgctgaaggcgttcaaggttcgggcgcttcaggttcggca
gcaggagtgctgatcaaactcttctgcgtccacaccaaggcccttcaggatgtacagata
aggttccagcccctccatagtccagatacagccacttcagtccctccccatggttcccgc
gaagactttgcattccctgatcacctggccgacatcggcatggaaggccggggctctgag
aagggatccatccacggctcccagccggacctgcgacgcatttcggaactgtctgtgccc
gtagacttcctgccgccatcgaatgacaccaaacccaaacttatgactccagacgcattc
atgactcccagcacatctctgcagcagatcacagggtctcccggaagtagcatcagttcc
ctcacggctgtgacccccatgagcacttcttcggtcggcgagcccccccttcccagctta
tttcttcccacagttgtgaagcgaattcctgcagtccttaaattagtaacacagctgtta
agtgaacctgggttccacactgacttgtcagaaggatcgtgtaaggaatgctacaagaga
atcaacttctttgtttttccactcaaggtttccccagggaaccctcctcctttggccctg
gagcaggaggaagtggagcctctggtggtaccccagtcctctccaactcgtgagcgctcc
ccagacgtcatctcctcagcctcgactgccatgtcccaggacatccctgaaattgcctcg
gagaccctgcagcgcagctttggtgcagccccctctggccttccggtagaaattctggac
gccaaccatcacacggacagcatggcttcggcggcctccgcactccacttgctttccccg
cgcaaccgacacagctcagagcccagccatcactccttggacatgacccccaacgaggtg
gacatgctgaccgccccctcgctgctggagatggccttacctcaggaaaacgtggcgttg
gatagcggggtgagtcagccgtggccggccgcccctgacatcaccagggagacaaggaac
agcatggcagacagccccaggaatgaagtggaagagaagcataagagctcttgtcacaga
catacctatcgcttgctgcagcacgacagccaagacgccagtgccgagcagagtgatcac
gatgatgaagttgtgagcttggctaccacttctggcgggttcacaaccaaagtgacggcc
cagcggctgccagtgaaggactggaaggccaaagtttctcctcgggcctctccgaagctg
aagaggaaggggaagaaagatgacagggatgcgccaccatccccaaggtccttcgatcag
cagagtgctcctgaataccaggaggagctgatgtctctgctcaggacccagcaaagggag
attgctgaacagagacaaaatcagatggatctgatgcaaaggctggcagatcacctggat
gctgtccagagctctcttatgggtcacatcgagcgggtgatcgactcccagcaggagcag
gagcagcggaggttggaccaggctctggccgaaggacagcagcgcagtgggcagctgcaa
gagcacctgtcccagcagctctcccagtccctctctacggctgcctgcaatcggttggag
aggaccatccgcgaggagatgaaaaagacagttcccccgtgtgtatctaagagcttggat
cccatcactggacagctgagtaacactattgcaaataagctaacagccatcgaaggaact
ctgaaggagaacattgccaaactggtgaaatcaaagaaccttaccgacaccatcgctcgg
gcagccaccgataccttacaggtgcccatgcagacagcatttcgagaggcctttcaaagt
atagttctacctgcttttgagaagagctgccagtctatgttccagcagatcaacgacacc
ttcaagcaaggcacgcaagaatatattctgcagttagaagctcagttgaagacgaagaag
gcgcgggaacaagaagcccgtgactctctcgtgggtcaactccggcagatggtcaactcc
ttccaaagtgcaactgaccaaatgacatccgccattacagccagtgtgcattctgagatc
cagcatcagcttcacgtcattgtgggcaacatgcaagagtccatcttgactcaggtgcag
cgagtcatcaagggggaagtgagcacggccatgaaggaacagcaggctgctgtcacctcc
agcatcatgcaggccatgcgctcggctgcaggcacgcccatccctgccacccacctagac
ttccagtcccagcaggctcacatgctgcagcttttgcagcagggacacctgaaccaagcc
ttccaacaggccctcactgcagctgatttgaatctggtcctctatgtctgtgagacagtt
gatcctcagcaagtgtttggacaggacccttgtcctctgtctcagccagtccttctgtct
ctcattcagcagctctcttcagatttaggctcccggacagagctcaaactcaactacctg
gaggaggcggtgatgcacctcgaccacagcgaccccatcacccgtgaccacatgggctct
gtgatgaaccaggtgcgccagaaactcttccagttcctgcaggtggagcctcacaacaac
ttgagcaagcccgcccggcgcctgatgatcatgctgcaaggcctggtcacacacaacatg
gcctga
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integrated database retrieval system
