Thamnophis sirtalis (common garter snake): 106552427
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Entry
106552427 CDS
T06107
Symbol
DDB2
Name
(RefSeq) DNA damage-binding protein 2
KO
K10140
DNA damage-binding protein 2
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03420
Nucleotide excision repair
tsr04115
p53 signaling pathway
tsr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
106552427 (DDB2)
09124 Replication and repair
03420 Nucleotide excision repair
106552427 (DDB2)
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
106552427 (DDB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tsr04121
]
106552427 (DDB2)
03400 DNA repair and recombination proteins [BR:
tsr03400
]
106552427 (DDB2)
Ubiquitin system [BR:
tsr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
106552427 (DDB2)
DNA repair and recombination proteins [BR:
tsr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
106552427 (DDB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40_CDC20-Fz
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WD40_RFWD3
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
NBCH_WD40
CE2_N
Beta-prop_VPS8
Beta-prop_NUP159_NUP214
Motif
Other DBs
NCBI-GeneID:
106552427
NCBI-ProteinID:
XP_013926176
UniProt:
A0A6I9YPU3
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MQKNIVHYVYQNMVDGTIGSQLKKCLQVPFVRSLYLYRLFRTASPFDRRITALEWHPMHP
STVAVGSKGGDIILWNYEVLNKACFIKGIGAGGAITGMKFNPFNSSELYTSSVSGTTVLQ
DFNGNRIRILANTHDWNFWYCSVDVSATRRTVVTGDNVGNVILLSTEGEKIWNLKLHKRK
VTHVEFNSHCDWLLATASMDQTVKIWDLRNIKDKSSCLHVLQHDKGVNAAYFSPIDGAKL
LSTDQQNEIRVYSSSDWSKPQHSISHPHRQFQHLTSIKATWHPRYDLIVVGRYPDPKFPG
YTADELRTVDIFDGNSGEMVCQIHDPNVSGIISLNKFNPMGDILASGMGFNILIWDREVM
IGKKQEDLMQAMKEQKDVPHQRGQRQRQSNKETNKSKTKLLSLELEDTKTKGKEYTMYTK
RRKDPEDL
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaagaatattgtccactatgtttatcaaaatatggtggatggcactattggatca
cagcttaagaagtgtctccaggtgccctttgtacggtctctctacttgtaccgtctgttc
cgaacagcaagtccctttgacagaagaatcacagctttggaatggcatccaatgcatccc
agcaccgttgctgtgggctccaaaggaggagacatcatcctgtggaattatgaagtgctc
aataaagcatgttttattaaagggattggagctggaggggccatcacaggaatgaagttt
aatccttttaattcaagtgagctgtacacatcatcagtttctggaactactgtcttgcaa
gattttaatggcaacagaatccggatcttggccaatacccatgactggaatttctggtat
tgcagtgttgatgtatctgcaactcgtcggactgtagtaacaggagataacgtaggaaac
gtgattttgctcagtactgaaggtgaaaagatatggaatttgaagctccacaaaaggaaa
gtgactcatgtggagtttaattctcactgtgattggctgctggctacggcctctatggat
cagacagtcaaaatctgggatctgagaaatattaaagataaatcgagttgtcttcatgta
cttcagcatgataaaggtgtcaatgcagcttatttcagtccaatagatggtgctaagcta
ctgagtacagatcaacaaaatgaaatccgggtttattcgtcttctgattggtccaaacca
cagcattcaatttcacatcctcatagacagttccagcatctcacatctatcaaggcaaca
tggcatcctcgttatgatcttattgtggttggtcgttatccagaccctaagttcccaggg
tacacagcagatgagctgagaactgttgacatatttgatggcaacagtggagagatggtg
tgccaaatacatgatccaaatgtatcaggcattatctctctcaataagtttaaccccatg
ggcgacatcttggcttcaggaatgggctttaatattctgatatgggaccgagaagtaatg
ataggtaagaagcaagaggatctcatgcaagcaatgaaagagcagaaggatgtgccccac
caaagaggacagaggcaaaggcaatcaaacaaagaaacaaacaaatccaaaactaaactg
ctcagtcttgaattagaggacaccaaaacaaagggtaaagaatatacaatgtacactaag
agaagaaaagacccggaggacttatga
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