Thamnophis sirtalis (common garter snake): 106552524
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Entry
106552524 CDS
T06107
Symbol
CHD1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsr03021
]
106552524 (CHD1)
03036 Chromosome and associated proteins [BR:
tsr03036
]
106552524 (CHD1)
Transcription machinery [BR:
tsr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
106552524 (CHD1)
Chromosome and associated proteins [BR:
tsr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
106552524 (CHD1)
SLIK complex
106552524 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
CDH1_2_SANT_HL1
Chromo
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
106552524
NCBI-ProteinID:
XP_013926299
UniProt:
A0A6I9YQV3
LinkDB
All DBs
Position
Unknown
AA seq
1125 aa
AA seq
DB search
MTENLHRSVECECEDWQMSGSGSISGTASESEIEGSREKSSCEESESDYEPKNKVKSRKP
PSRIKQKSGKKTAVQKKRQLDSSSSSDDDDYDKRGSRRQATVNVSYKEAEEAKTDSDDLL
EVCGEDVPQPEEDEFETIEKFMDSRIGRKGVTGATTTIYAVEADGDPNEGYDKSKESGDT
QYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETKRWLKNASPEDVEYYNC
QQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALIAKKFQSR
IDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPNYIGGHENLELRDYQLNGLNWLAHSW
CKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWAPQM
NAVVYLGDITSRNVIRTHEWMHLQTKRLKFNILLTTYEILLKDKSFLGGLNWAFIGVDEA
HRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLQFIMPEKFSSWEDFEEEHG
KGREFGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKA
LSKGSKGSTSGFLNVMMELKKCCNHCYLIKPPDDNEFYNKQEALQNLIRSSGKLILLDKL
LIRLRERGSRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEASE
DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG
SVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSAPFNKEELSAILKFGAEEL
FKEPEGEEQEPQEMDIDEILKRAETRENETGPLSVGDELLSQFKVANFSNMDEDDIELDP
EQNSRNWEEIIPEVHRRRLEEEERQKELEEIYMLPRMRNCAKQISFNGNEGRRFRNRRYS
GSDSDSVSDRKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAE
LVDKSEIDLRRLGDLVHNGCFKALKDNSSGQERAGTECLTAAMWYEPKQKVHIIPLCSIK
IITFLGRALDFMNKLLLIWLTAVFCLLMCFLLLFPDKSSIACLLP
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagaatctccatagatctgtagaatgcgaatgtgaagattggcaaatgtctgga
tcaggatctatttcgggaacagcttcagaatctgaaatagaaggaagcagagaaaaaagt
agttgtgaagagagtgaatctgattatgaaccaaaaaataaagtcaaaagcaggaagcct
ccaagcagaataaaacaaaaaagtggaaagaaaactgcagtgcagaaaaaacgacaactt
gactcatcctcatcctcagatgatgatgattatgataaaagaggttctcgccgccaggca
acagtaaatgttagttataaagaagctgaagaagcaaagacggattcagatgatctccta
gaagtttgtggagaggatgttccacagcctgaagaagatgaatttgaaacaattgaaaaa
tttatggatagtcgcattggaagaaaaggagtaactggtgctacaaccactatctatgca
gttgaagctgatggagatccaaatgaaggatatgataaatcaaaagaatctggtgatacg
cagtatttgattaaatggaaaggttggtcccatattcataatacctgggaaactgaagaa
actctaaagcagcagaatgttagaggaatgaagaaactggacaactataagaaaaaggat
caggaaactaagcgctggctgaaaaatgcttctccagaagacgtagaatattacaactgt
cagcaagagcttacagatgacttgcataagcagtatcaaattgtagagagaattattgcc
cattctaatcagaagtcagcagctggttatccagattactattgtaaatggcaaggtctt
ccttactcggagtgtagctgggaagatggagctcttattgcaaaaaagttccagtcacgc
attgatgagtattttagtagaaatcagtcgaagactacgccatttaaagattgtaaggtt
ttgaagcaaagaccaagatttgtggctttaaagaagcaacctaattacattggaggtcat
gagaacctagaattaagagattatcaattaaatggactaaattggttggcccattcatgg
tgcaagggaaacagctgtattcttgctgatgaaatgggtttgggcaaaacgatacaaacc
atctcctttttgaattacttatttcatgagcatcagttgtatggccctttcctgctcgta
gtacctctttccaccctgacatcttggcaaagagaaatccagacatgggctccccagatg
aatgctgtagtttatttgggagatattaccagtagaaatgtgataagaactcatgaatgg
atgcatctacagactaaacgattaaaatttaacatcttattgacaacctatgaaattctg
ctgaaagataagtcattccttggaggcttaaattgggcctttataggagtagatgaagct
catcgattaaaaaatgatgactccctcttatataagacattaatagacttcaaatctaac
catcgccttcttatcactggaacacctctacaaaattccctgaaagagctgtggtccctg
cttcaattcatcatgccagaaaaattctcttcttgggaagattttgaagaagaacatggg
aaaggaagagaatttggttatgcaagtcttcacaaagaacttgaaccatttctgttgagg
agagttaagaaagatgtagaaaaatctctacctgccaaggtggaacaaattttaagaatg
gaaatgagtgcattgcaaaaacagtattacaagtggattttaacaaggaattacaaagcc
ctaagtaaaggatcaaaaggcagtacctcaggctttctgaatgtcatgatggaactcaaa
aagtgttgtaatcattgctacctcattaagccaccagatgataatgaattctataacaaa
caggaggccttacagaacttgatccggagtagtgggaagctaattcttttagacaagctg
ctgattcgcttacgagagcgtggcagtagagtacttatattctctcagatggtgcggatg
ctggacatcttagctgaatatttgaaatatcgtcagtttccctttcaaagactagatggg
tcaataaaaggagaactgaggaaacaagcactggatcattttaatgcagaagcctctgag
gatttttgctttttactgtctacaagagctggaggtctaggtataaatttggcatctgct
gatactgttgttatatttgattctgactggaaccctcaaaatgatctgcaagctcaggct
agagcacacagaatcggacaaaaaaaacaggttaacatttatcgtttagtgaccaaagga
tcagtagaggaagatattttggagagagccaagaagaaaatggttttagatcatttagtc
attcagagaatggacactacaggaaaaactgtgttacatacaggctctgcaccttctagc
tctgctccttttaacaaagaggaactgtcagctattctaaagtttggtgctgaggaactt
ttcaaagaaccagaaggggaagaacaggaaccgcaggaaatggatatagatgaaatattg
aagagagctgaaacacgggaaaatgaaactggaccattaagtgtgggagatgaattgctc
tctcagtttaaggtggccaacttttccaatatggatgaagatgatattgaattggaccct
gaacaaaattcaagaaattgggaagaaataattccagaggtccatagacgaagattagaa
gaagaagaaagacaaaaggaattggaagaaatttatatgcttccaagaatgagaaactgt
gcaaaacaaataagttttaatggaaatgaaggaagacgttttagaaacagaagatattct
ggatcagacagtgactctgtctcagatagaaaacgaccaaaaaaacgtggaagaccacgg
accattcctcgggaaaacattaaaggatttagtgatgcagagattcggaggtttatcaag
agttacaagaaatttggggggcctcttgaaagattagatgccatagctagagatgctgaa
ttggtggataaatctgagatagatctccggcggcttggagaccttgtacataatggatgc
ttcaaagctttgaaagacaactcatctggacaagaaagagcaggtacagagtgcttaaca
gcagctatgtggtatgaacccaagcaaaaagttcatattatacctctttgctccataaaa
atcataacattccttggtcgtgcccttgactttatgaacaagttattactgatatggctg
acagcagttttctgtttgttgatgtgttttcttctcctgtttccagataaatccagtata
gcatgtttgttaccttag
DBGET
integrated database retrieval system
