Thamnophis sirtalis (common garter snake): 106553808
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Entry
106553808 CDS
T06107
Symbol
COL20A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XX) chain
KO
K08133
collagen type XIV alpha
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
tsr00535
]
106553808 (COL20A1)
Proteoglycans [BR:
tsr00535
]
Extracellular matrix (ECM) proteoglycans
Others
106553808 (COL20A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
VWA
Collagen
VWA_2
Pur_ac_phosph_N
Trypsin
Ig_DSCAM-DSCAML_C
DUF4992
Motif
Other DBs
NCBI-GeneID:
106553808
NCBI-ProteinID:
XP_013927851
UniProt:
A0A6I9YV19
LinkDB
All DBs
Position
Unknown
AA seq
1404 aa
AA seq
DB search
MRVEEQEKEIKGSLVATLGAPTDLVTSEVTARGFRVSWTHAPGKVEKYRVVYYPTKGGQP
EEVVVDGTVSTAVLKNLMSLTEYQIAVFAIYVSSASEGLRGTETTLALPMASDLELHDVS
HNSMKIKWKAVAGATGYMILYAPLIDGLAAEEKEMKIGVSSTHVELEGLLPNTDYTVTVY
AMFGEEASDPLTGQETTLPLSPPRNLKFSNVDHSSAKITWDPPPSKVKGYRIMYVKTDGT
ETNEEEVDQVSAHILKSLTSLTEYTVAVFSLYSEGQSEPLTGSFSTKKVPSPEFLEIIEV
STESLTVSWKPPSSDVALYRLAWIPLTGEEADEIILSGDVDTYEIEGLLPNMEYEVSLVA
LFDDESESDVVAVLGSTLEILTTEVTTITTESTTTPQPTTAVFRTGIKNLMVEDETTSSL
KVKWDITDLSVSQFRVTYMKADGGHGEETVTVPVRQNNVLLQPLLSDTEYKIMVTPIYAD
GEGVSLSAPGKTLPLSPPQNLKVSDEWYNRLRISWDAPRSPTMGYRIVYKPVNISGPALE
TFVGDEVNTILILNLLSGTEYNVKVFASYTTGFSEALTGVAKTLYLGVTNLGAYQTRMTS
LCAQWQPHRHATAYRIVIESLNDGAIEEEPLGWGASRHCFYQLFPGTKYNISVYSQVQEL
EGPAVSIIEATLPYPTEPPPTPSTTTPPPTIPPAKEVCKAAKADLVFLVDGSWSIGDSNF
NKIIGFLYSTVGALDKIGPDGTQVAIAQFSDDTRTEFKLNAYRSKETLLDAIQHIAYKGG
NTKTGRAIKHAQQILFTLESGTRKGIPKVLVVITDGRSQDDVNHVSREMQLDGFSIFAIG
VADADYAELVNIGSKPSDRHVFFVDDFDAFKKIEDELITFVCETASAISGPALETFVGDE
VNTILILNLLSGTEYNVKVFASYTTGFSEALTGFKMMDMFGLVDKEFAAVEGVSMEPGTF
NAYHCYGLHKDALVSQPTKYVLKIRLLSGTRIRILHXVQAQKFSEPYSLVHCADDGKTLT
FFNYDYKGEFQTVTFEGPDIKKIFYGSFHKLHIVISKTTAKVVIDCKEVGEKIINAAGNI
TSNGIEVLGRMVRSRGPRDSSAPFQLQMFDIVCSTSWANRDKCCELPALRDEEGCPALPH
SCSCSEVNKGSPGPSGPPGGPGLRGPKGSRGDDGPKGPDGPRGEMGSPGPQGPPGPQGPS
GLSIEGPPGPNGEKGERGEIGRPGLQGIPGPTGSPGRDGSQGPRGLPGVKGEKGERGDLQ
THSMVRAVARQVCEQLIQTHLARYNSILNQIPSNSIATRTVPGPPGEPGRQGLPGPQGEQ
GASGSPGFPGNPGQPGTPGERDGNSLCMMATGDSGGPLVCQNGPTWYLVGIVSWGNSSCN
VTIPAVYARVSKFRNWIDQVVATH
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgagagttgaagaacaagagaaagaaatcaaaggatctttggttgccacacttggagca
cctacagacttggtcacatctgaagtgacagccagaggattccgtgtgagttggactcat
gcaccaggcaaagtggaaaagtaccgagttgtctattatcccaccaaaggagggcaacca
gaagaggtggtggtagatggaacagtttcaacagcagtactgaaaaatttgatgtcttta
accgagtatcagattgctgtgtttgccatctatgttagttctgccagtgaaggtctccgg
ggtactgaaacgacacttgcgttaccaatggcatctgatttggagttgcatgatgtctcg
cacaacagtatgaaaataaagtggaaggctgtagctggtgcaactggctatatgattctg
tatgcgcccctcattgatggtttagcagcagaggaaaaggagatgaaaattggagtgagc
tccacacatgttgaacttgagggtctgctacccaacacagactatacggtcacagtttat
gcaatgtttggagaagaagccagtgaccctcttacaggacaagaaacaacattgccttta
agcccaccaagaaatttgaagttttcaaatgtggatcacagctcagccaaaataacatgg
gatccacctccatcaaaggtcaaaggctatcgcattatgtacgtgaagacagatgggacc
gaaaccaatgaggaagaagttgatcaagtgtcagcacacattctgaagagcttgacatct
ctcactgaatatactgtagccgttttctccctctatagtgagggtcagtctgagccactc
acgggaagctttagcacaaagaaagttccgtcacctgaatttttggaaatcattgaagta
tctactgaaagtttaacagtaagctggaagccaccatcctctgatgtggctctttaccgt
ctagcatggattccattgactggcgaagaagctgatgagatcatcttaagtggagatgtg
gacacttacgagatcgaaggcttgctacccaatatggaatacgaggtgtccttggtggcc
ctctttgatgatgaaagtgaaagtgatgttgttgctgtacttgggagcacacttgaaata
ttgactactgaagtaactactattactacagaaagtactactactcctcagcctacaaca
gcagtctttcggacaggaataaaaaatctcatggtcgaagatgaaactacctcaagtctg
aaagtcaaatgggatattacggacctcagtgtttcccagttcagggtgacgtatatgaag
gctgatggtggtcacggggaggaaacggttacagtacctgtgaggcaaaacaatgtgctt
cttcagcctttgctctcagacactgaatacaaaattatggtcaccccaatctatgctgat
ggagaaggagttagtttgtcagctccaggaaaaactttgcctctttctcctccacaaaat
ctaaaagtctctgatgaatggtacaaccgattaaggattagctgggatgcgcctcgatcc
cccacgatggggtataggattgtatataaacctgtgaatatttctggaccagcacttgaa
acctttgtgggtgatgaagtcaacactatccttatcttgaatttgcttagtggaacagag
tataatgttaaagtatttgcttcttacacaactggatttagtgaagccttaacaggtgtt
gccaaaacattgtatttgggtgtgacaaacttaggagcttatcaaacccgaatgacaagc
ttatgtgcccaatggcagccccacaggcacgcgactgcttacagaattgtaatagaatct
cttaatgatggggcaatagaagaagaaccattaggttggggagcatctaggcattgtttc
tatcaactctttcctggcacaaaatataacatcagcgtttactcacaagttcaggaattg
gaagggcctgctgtcagtataatagaggcaacactgccctacccaactgagccaccacca
actccttcaaccaccactccaccgcctacgattcctccagcaaaggaagtttgcaaagct
gcaaaggctgacctggtatttttggtggatggatcttggagtattggagattcaaatttc
aacaaaataattggctttctatatagcactgttggtgcccttgacaagattggtcccgat
ggaactcaggtggcaattgcccagttcagtgatgatacgaggacagaatttaaattgaat
gcctacagaagcaaagaaactctactagatgccattcagcacatagcctacaaaggggga
aacaccaaaacaggcagagcaattaaacatgctcaacagatcttatttaccttggagtct
gggaccaggaaggggatcccaaaagttttagtagtgatcacagatggacgatctcaagat
gatgtgaaccacgtttccagagagatgcaactagatggattcagcatatttgccattgga
gttgcagatgctgattatgcagaactggttaacattggcagcaagccgagtgacagacat
gtgttctttgtggatgactttgatgccttcaagaagattgaagatgaactgatcactttt
gtctgtgaaacagcctctgcaatttctggaccagcacttgaaacctttgtgggtgatgaa
gtcaacactatccttatcttgaatttgcttagtggaacagagtataatgttaaagtattt
gcttcttacacaactggatttagtgaagccttaacaggatttaaaatgatggacatgttc
ggcttggttgacaaagagtttgcagctgtggaaggagtgtctatggaacctggaacattt
aatgcctaccactgttatggactgcataaggatgctttggtctctcagccaaccaagtac
gtactgaagataaggctattgtcaggcacaagaatcaggatccttcactaagtccaagca
cagaaattctctgaaccttattctctcgtacactgtgcagatgatggcaaaaccttgact
ttcttcaattatgactacaaaggggaattccagacggtaacctttgaaggacctgacata
aagaaaatattttatgggagtttccataagctgcatattgttatcagcaaaaccaccgct
aaagtagtgattgattgcaaggaagtgggtgagaagattatcaacgcagcaggaaatatc
acttctaacgggattgaagtactgggaagaatggttcgatcaagaggaccaagagacagt
tctgcaccattccagctgcagatgtttgatatcgtttgttccacttcgtgggccaataga
gataagtgctgtgaacttccagctttgagagatgaagaaggctgccccgcccttccacat
tcttgctcctgctctgaagtcaacaaaggatctcctgggccctcaggaccacctggaggt
ccagggctccgaggtccgaaaggaagccgtggtgacgatgggccaaagggacctgatgga
cctcggggtgaaatgggttctccaggccctcaagggcctcctggaccacaggggccaagt
ggactttcaatcgaaggacctccgggaccaaatggagaaaaaggagaaaggggagaaatt
gggcgtccaggtcttcagggtattccaggaccaacggggtcaccaggacgagatggaagc
caaggtccaaggggacttcctggagtaaaaggcgagaaaggcgaacgtggagatcttcag
acccattcaatggtacgggcagtagctcgtcaggtgtgtgaacagcttattcagactcat
ctggctagatacaactccatcttaaatcagattccaagcaactcgatcgctacacgaact
gtcccaggcccccctggtgaaccaggacggcaaggcttacctgggccacagggagagcaa
ggagcttcaggaagcccaggtttccctggcaatcctggccaacctggaaccccgggagaa
agagatggaaacagcttgtgcatgatggctacaggtgattctggtggccctctggtatgc
cagaacggcccaacttggtatctggttgggatcgtctcctggggaaactccagctgcaac
gtcactattcctgctgtctatgcccgagtctccaaattccgcaactggattgaccaagta
gtagccactcactga
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