Thamnophis sirtalis (common garter snake): 106554040
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Entry
106554040 CDS
T06107
Name
(RefSeq) neuronal PAS domain-containing protein 3 isoform X1
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tsr03000
]
106554040
Transcription factors [BR:
tsr03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
106554040
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS_11
PAS
PAS_9
PAS_4
HLH
bHLH_NPAS4
Motif
Other DBs
NCBI-GeneID:
106554040
NCBI-ProteinID:
XP_013928115
UniProt:
A0A6I9YWY2
LinkDB
All DBs
Position
Unknown
AA seq
923 aa
AA seq
DB search
MAPTKPSFQQDPSRRERLQALRKEKSRDAARSRRGKENFEFYELAKLLPLPAAITSQLDK
ASIIRLTISYLKMRDFANQGDPPWNLRMEGPPPNTSVKGIQIWKSEVCMRKTPCEVIGAQ
RRRSPSALATDVFESHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSS
VFDYVHPGDHVEMAEQLGMKLPPGRGLLSQGTAEDGASSASSSSQSETPEPDTDTAVILS
VAKFCAVACPVHQMTLQESVETTSPSLLSTDNNLERSFFIRMKSTLTKRGVHIKSSGYKV
IHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPPPTINEVRIDCHMFVIRVNMDLNIIY
CENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKSGGY
IWIQSSATIAINAKNANEKNIIWVNYLLSDPEYKDTPMDIAQLPHLPEKTSESSETSDSE
SDSKDNSEDNENSKSDEKGNHSENSEDPESDRKKSGNQSDNEMNCNDDGNSSSNQDSRDS
DDSFENSDFENQKAPEDSFGTLGSMQIKVERYVESESDLRLQNCESLTSDSAKDSDSAGE
VNAQSSSKHQKRKKRRKKQKGGSVARRRLSSTSSPNGLDSALVDQPQLLSPPNSASVLKI
KTEISEPINFDNDSSIWNYPPNREISRNESPYSMTKPPNSEHFPSPQTSSSLHVSIPDSV
LTPPGTENPANRKSQFSTSSNSALAPVSSDPLSPPLSASPRDKHPGGPSTSNSLLYTGDL
EALQRLQAGNVVLPLVHRVTGTLAATSTAAQRVYTTGTIRYAPAEVTLAMQGNLLPNTHA
VNFVDVNSPSFGLDPKTPMEMLYHHVHRLNMSGPFGSAVSAASLTQMPAGNVFTTAEGLF
STLPFPVYSNGIHAAQTLERKED
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccaccaagccaagctttcaacaggatccttcgaggcgagaacgtttacaagcc
ttgagaaaggaaaaatcccgagatgctgctcgttctcgaagaggaaaagaaaattttgaa
ttctatgagttggccaaattgttgccactccctgctgccattaccagccagcttgacaag
gcatctatcatccgattaacaattagctatttgaagatgagggactttgctaatcaaggg
gatcctccatggaacctgcgtatggaaggaccacctcccaacacgtcagtgaaagggata
caaatatggaaatctgaggtctgcatgagaaagacaccatgtgaagttataggtgcccag
cgcaggagaagccccagtgcccttgccactgacgtatttgagtcacatttgggaagtcac
attttacagtcactggatggatttgtatttgcactaaaccaagagggaaagtttttgtac
atttcggaaaccgtctccatttatcttggcctctcccaggtggaactgacaggcagcagt
gtgtttgactatgtccatcctggtgaccacgtggagatggctgagcagctgggcatgaaa
cttcccccaggacgaggccttctctcgcagggaacagccgaagatggagccagctcagct
tcctcatcttcccagtctgagacccctgagccagatacagatacagctgttatacttagt
gtggccaaattttgtgctgtggcttgtccagtccaccaaatgactcttcaggaatcggtg
gaaactacaagcccaagcctactttcaactgacaacaatctagagcgttcttttttcatt
cggatgaaatcaacactgaccaagcgaggtgtacacataaaatcttcaggatataaggtg
atccatataacaggaaggttacgactaagagtgtcgctgtctcacgggcggaccgtcccg
agccaaatcatgggacttgttgtcgttgctcatgccctgccccctcctacaatcaatgaa
gtccgaattgactgccacatgtttgttattcgagtaaacatggacctcaatattatttac
tgtgaaaataggattagcgattacatggatctgacccctgtagatattgtagggaaaaga
tgttaccacttcattcatgctgaagatgtggaagggatcaggcacagtcatttagacctg
ctgaacaagggtcagtgtgttacaaaatactaccgttggatgcagaaaagtgggggctac
atttggatacagtctagtgccactatcgctattaatgccaagaatgcaaatgagaagaac
atcatctgggttaattaccttctgagcgatccagagtataaggacactccaatggatatt
gcacaacttccacacttgccagaaaaaacctcagaatcctctgagacctctgattctgaa
tcagattcaaaagataactcggaggacaatgagaattcaaagtcggatgaaaaaggaaac
cattcagaaaacagcgaagatcccgaatcagataggaagaagtctggcaatcagtcagat
aatgaaatgaactgtaatgatgatgggaacagctccagcaaccaggacagcagagacagt
gatgacagctttgagaattctgactttgagaatcaaaaggcccccgaagatagctttggc
acgcttggttctatgcagattaaggtggagcgctatgtggagagtgagtcagacttgcgg
ttacagaactgtgagtcattgacctcggacagtgccaaggactcagacagtgcaggagaa
gtaaatgcccagtcttccagcaagcatcaaaaaaggaagaagagaaggaaaaagcagaaa
ggaggcagcgtggcccggagaaggctctcaagcacctcaagcccaaatgggcttgactca
gcattggtggaccagccccagctgctctcaccgccaaacagtgcctcagtgctcaaaatc
aagacagagatctcagaacctatcaattttgataatgatagcagtatttggaattaccca
cccaacagggaaatctcaaggaatgaatcaccttacagtatgaccaagccccccaactca
gagcacttcccttccccccaaaccagcagtagtttacatgtctccattccagactctgtt
ctaaccccgccagggactgaaaatcctgccaatcgcaaatctcagttcagcacctcatct
aactccgccttggctcctgtatcctctgaccctttatccccacctctgtcagcatctcca
cgggacaagcatccgggtggccccagcacttccaattctttactgtatacgggggatctg
gaagccctacagagattgcaagcaggcaatgtggtccttcctttggttcacagggtaact
ggaacccttgctgccaccagcacggctgctcagagggtctataccactggcacgatccgg
tatgccccagctgaagttactttagccatgcagggcaatcttctccccaacactcacgct
gttaactttgtggacgttaacagccccagttttggcttagatcctaaaacaccaatggaa
atgctctaccaccatgtccaccgactcaacatgtcaggaccgtttggaagtgctgtgagt
gcagccagcctgacccaaatgcctgcagggaatgtgttcacaactgccgaaggactgttc
tcgactcttccgtttccggtgtacagcaacggcatccatgccgcacagacactggaacgg
aaggaggattga
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