Thamnophis sirtalis (common garter snake): 106554135
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Entry
106554135 CDS
T06107
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106554135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tsr03041
]
106554135
Enzymes [BR:
tsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106554135
Spliceosome [BR:
tsr03041
]
Complex C
Other components
Step II factors
106554135
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
T2SSE
AAA_16
Cas3-like_C_2
ABC_tran
PhoH
TsaE
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
106554135
NCBI-ProteinID:
XP_013928217
UniProt:
A0A6I9YV91
LinkDB
All DBs
Position
Unknown
AA seq
764 aa
AA seq
DB search
MDMSPIKIVKNPDGSLSQAAMMQSALAKERRELKQAQREAEMDSIPMGLNKHWVDPLPDV
DGRQIAANMRGIGMMPNDIPEWKKHAFGGNKASYGKKTQLSIIEQRESLPIFRLKDQLIQ
AVHDNQILIVIGETGSGKTTQITQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVSEEFGC
CLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEAHERTIHTDV
LFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEILYTKEPETDY
LDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSAL
PSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVV
TPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMG
INDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMS
VHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNK
FSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKATVRVQKAICSGFFRNAA
KKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEF
APAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRISRAFRRR
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atggacatgagccccattaaaatagtgaagaatcctgatggctccctgtctcaagcagcc
atgatgcaaagtgcacttgctaaagagaggcgggaactgaagcaagcccagcgggaagca
gagatggattctattcccatggggctcaacaaacactgggtggatccccttccagatgtg
gatggaaggcaaattgcagccaacatgcggggcattggcatgatgcccaatgacatacct
gaatggaagaagcatgcttttggaggcaataaggcttcttatggaaaaaagacacaactg
tcaataattgaacagcgagaaagtcttccaatttttcgtctgaaagatcaacttatccag
gcagttcatgataaccagattctgattgtcattggtgagactggctctgggaaaactaca
cagatcacacagtaccttgctgaagctggctacaccacccgtgggaagatcggctgcact
cagcctcgtcgggtagctgccatgtctgttgctaagagggtttcagaagaatttggttgt
tgtctaggacaagaggttggttatactattcgatttgaggattgcactagtcctgaaacc
gtgatcaaatacatgacagatgggatgctgcttcgcgagtgcctcattgatccagatctg
acacagtatgcaatcataatgttggatgaagcccatgaacgcactatacatacggatgta
ctctttggtctcctgaaaaagacagttcagaagagacaagacatgaaattaatagtgacc
tcagctacactggatgcagttaaattctctcagtatttctatgaggctcctatctttacc
attcctggtaggacatacccagtcgagattctctacaccaaggaacctgagacggattac
ttggatgccagcctgattacagtcatgcagatccacttgacagaacctccaggagacatc
ttggtgttcttgactggccaggaagaaattgatacagcttgtgaaattctctatgagcga
atgaagtccctcggtccggatgttcctgagctgataatcttgcctgtttattcagcacta
cctagtgagatgcagacacggatctttgatccagctcccccgggaagtcgaaaggtggtc
attgccacaaatattgctgaaacttcacttacaattgatggtatctattatgtagttgat
cccggttttgtaaagcagaaagtgtacaactccaagacagggattgaccagctggttgta
acaccaatttctcaggcccaagctaagcaacgagctggaagagcaggaagaacaggccct
ggcaagtgctaccgactctacacagagcgggcctaccgtgatgagatgctgaccaccaat
gtgcctgagattcagagaactaatctggcaagcaccgtattatctcttaaggctatgggt
atcaatgatttgctgtctttcgatttcatggatgccccaccaatggagactctgatcact
gcaatggagcaactgtataccctgggagctttggatgatgaagggctgctcactcgactg
gggcgcaggatggcggagttcccactggagcctatgctttgcaagatgctcattatgtca
gtgcacctaggttgcagtgaggaaatgctcaccattgtctcaatgctgtctgtgcaaaat
gttttctatcgaccaaaggacaagcaagcacttgctgaccagaagaaagctaagttccac
caaactgaaggagatcatctcacacttttggctgtttacaactcctggaagaacaataag
ttctccaatccctggtgctatgaaaattttatccaagcccgctcactacgtcgtgcccag
gatattcgtaagcaaatgctgggaataatggataggcataagttagatgtggtatcttgt
ggaaaagcaacagtacgagtccagaaagccatttgcagtggtttcttccggaatgcagcc
aaaaaggacccacaagagggctaccggaccttgattgatcagcaagtggtctatatccat
ccctcaagtgcccttttcaaccgccagcctgaatgggtggtgtaccatgagcttgtgctc
acaaccaaggagtatatgagagaggttactaccatagatccccgctggcttgtggagttt
gccccagcctttttcaaggtttctgatcccacaaagctaagcaagcaaaagaaacagcag
cgcctagagccactttacaatcgctacgaagagcccaatgcctggaggatatcacgggca
ttcagacgtcgatga
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integrated database retrieval system
