Thamnophis sirtalis (common garter snake): 106554218
Help
Entry
106554218 CDS
T06107
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03015
mRNA surveillance pathway
tsr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106554218 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
106554218 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106554218 (PABPC4)
03041 Spliceosome [BR:
tsr03041
]
106554218 (PABPC4)
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
106554218 (PABPC4)
mRNA cycle factors
Stress granule specific factors
106554218 (PABPC4)
Spliceosome [BR:
tsr03041
]
Complex C
Other components
Complex C specific factors
106554218 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_occluded
RRM_5
RRM_7
RBD_RDR6
RRM_10
POP1_C
DAXX_hist_bd
Motif
Other DBs
NCBI-GeneID:
106554218
NCBI-ProteinID:
XP_013928309
UniProt:
A0A6I9YWC3
LinkDB
All DBs
Position
Unknown
AA seq
624 aa
AA seq
DB search
MNAAAGSSYPMASLYVGDLHPEVTEALLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNF
QQPGDAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKSLDKSIDNKALYDTF
SAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDCKVFVGRFKSHKER
EAELGVKAKEFTNVYIKNFGDEMDDKRLKDLFSNYGKTLSVKVMTDPAGKSKGFGFVSFE
KHEEASKAVEEMNGKDFNGKIVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIK
NLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG
SKPLYVALAQRKEERKAHLTNQYLQRIAGMRALPANTIVSQFQPTSGGYFMPAVSQAQNR
PTYYAPNQMTQMRPSPRWQPGGRPQGFQGMHNSMRQSGPRPTLRHLAPTNAAQASCGVPG
APQKTGVAPRPPIATQAPRAVPPYRYAAGIHSPHPAVQPLQAPQPAVHVQGQDPLTASML
AAAPPQEQKQMLGERLFPLIQAMHLSLAGKITGMLLEIDNSELLHMLESPESLRSKVEEA
VAVLQAHQAKKVAAQKVDIVTATS
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccgccgccgggagcagctacccgatggcgtcgctgtacgtgggggacctgcac
cccgaggtgacggaggcgctgctctacgagaagttcagccccgccgggcccgtcctctcc
atccgcgtctgtagggacatgatcacccggcgctcgctcggctacgcgtacgtcaacttc
cagcagcccggcgacgctgagcgagccctggataccatgaactttgatgtaatcaaaggc
aagcccatccgcatcatgtggtctcagcgggacccctctttgaggaaatcgggtgtaggg
aatgtcttcattaagagcctggataaatccatagacaacaaagcactttatgacacgttc
tctgcttttgggaatattctttcttgcaaggtggtttgtgatgagaatggctccaagggc
tatgcttttgtgcactttgagacacaagatgctgcggaccgcgccatcgagaagatgaac
ggcatgctgcttaacgactgcaaagtgtttgttggccgatttaaatcccataaagaacgt
gaggcagaattgggagtcaaagccaaagagtttaccaacgtctatattaaaaactttggg
gatgagatggatgacaagaggctgaaggatctcttcagcaactacggtaagaccctcagt
gttaaagtgatgactgacccagctgggaaatccaaaggttttggcttcgtgagttttgaa
aagcatgaagaggccagcaaggcagtagaagaaatgaatggaaaagatttcaatgggaaa
attgtgtttgtgggtcgtgcacagaagaaggtggaacggcaggcagagctgaaacgcagg
tttgagcagctgaagcaagagaggatcagtcgttaccagggagttaatctctatatcaag
aacttggatgacacaattgatgatgagaagctgagaaaggagttctctccatttgggtcc
atcacaagtgcaaaggtgatgctggaagatggtcgaagcaaaggcttcggcttcgtctgc
ttctcctctccagaagaagccaccaaagccgtaactgagatgaacgggcgcattgtggga
tccaagccgctgtatgtggccttggcccagaggaaggaggagcgcaaggcccacctcacc
aaccaatacctgcagcgcattgctggcatgagagctctgccggcgaacaccattgttagc
cagttccagccgacttccggaggctatttcatgccggctgtgtcccaggctcaaaacaga
cccacatactatgcccctaaccagatgactcagatgagacccagtccacgctggcagcca
ggtgggaggcctcaaggcttccaaggtatgcacaacagtatgcgccagtctgggccacgg
ccaacgctacggcatttggctcccacaaatgctgctcaagcatcatgtggtgtgcctggt
gctccccagaagactggggttgctcctcggccacctatagccacccaggctcccagggct
gttccaccatacagatacgctgcaggcatccacagcccccacccagcagtccagccttta
caggccccacaacctgctgttcacgtgcagggacaagaccctttgacggcatccatgctg
gctgctgcacctcctcaggagcaaaagcaaatgctgggagaacgtctctttccattgatc
caagcaatgcacctcagcctggcagggaagatcactgggatgttgctggagattgacaac
tcggagctgctacacatgctggagtctccagaatccctccgttccaaggtggaggaggct
gtggcggtattacaggctcaccaagcaaagaaggtagctgctcaaaaggtggacattgtt
actgctacctcataa
DBGET
integrated database retrieval system
