Thamnophis sirtalis (common garter snake): 106554294
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Entry
106554294 CDS
T06107
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
106554294 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsr03400
]
106554294 (MSH2)
DNA repair and recombination proteins [BR:
tsr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
106554294 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_I
MutS_IV
MutS_II
MutS_III
AAA_27
HTH_RNase_II
MCU
Trimer_CC
Motif
Other DBs
NCBI-GeneID:
106554294
NCBI-ProteinID:
XP_013928419
UniProt:
A0A6I9YWM5
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All DBs
Position
Unknown
AA seq
794 aa
AA seq
DB search
MAASIDACVSAPREGCWPEGAGAESGFIRAVLALPAKPKTTVRFFERGDYYTVHGEDANL
AATEVFKTQAIIRMLGSGTQKLESVALSKMNFEYFARNLLLIRQYRAEVYKNKAGNKSTK
ESEWYLAYKGSPGNLVQFEDVLFGNHDMSSSAGVVAIKLSSVDGQKVVGVGYVDSLARKL
EVSEFADNDQFSNLEALLIQMGPKECLLPGGDTAGDMEKLKQLVQRGGILITDRKKTEFS
TKDAVQDLNRLLQSGKDRVSSAALPEMDKQMTPEEKTEAITXFPLSRNCSTLLDAIFTKP
LKELNCDFSNFQNMIDETLDMNTVESHEYLVKPSIDPNLAELRKRMDKLEEKMQGVLKIA
AKELSLEASKSIKLECNAQFGHFFRITYREEKVLRNNVKYKILETQKNGVKFSNSALKEI
NEDYVKNRKEYEEMQDAVVKEIINVASGYKEPIQILNDVIAQLDAIVSFAHASNAAPIPY
VRPVILEKGQGRITLKASRHPCIEVQDDVAFIPNDVTFEKDKQMFHIITGPNMGGKSTYI
RQTGVIVLMAQIGCFVPCDSAEVTIVDCILARVGAGDSQLKGVSTFMAEMLETSSILRTA
TEHSLIIIDELGRGTSTYDGFGLAWAISEYIASKMKAFAMFATHFHELTALADQIPTVNN
LHVTALTSKDTLTMLYRVKKGACDQSFGIHVAELAAFPKHVIECAKAKALELEDFQNIGI
SQEEDEEPAAKRCHREKQEGEQIIQDFLSQVKAMPLTEMSEEEIRTKLKELKDYVLKKNN
SFVNGIISRINGTS
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atggcggcctccatagacgcttgtgtttctgctccacgggagggatgctggcccgaaggc
gcgggtgccgaaagcggctttattcgcgccgtcttggcgttgcctgcaaaacctaaaacg
actgtgaggttcttcgagcgcggcgactactacacggtgcatggcgaagatgcaaacctg
gcggcgacggaggtcttcaaaacacaagcgatcattcggatgctgggctcaggaactcag
aaactcgagagtgttgcactcagcaagatgaattttgaatattttgcacgaaatcttctt
ctgattcgtcagtacagggctgaggtgtacaagaacaaggcaggaaataaatccaccaaa
gagtctgagtggtatttggcctataagggttctccaggcaaccttgttcaatttgaggat
gttctttttggtaaccatgatatgtcctcttcagctggtgttgtagccattaagctgtcc
tcagttgatggacagaaagttgttggagtcggatatgtggattcactggcaagaaaatta
gaagtatctgaatttgcagataatgatcagttttccaatcttgaagcactgttgatacaa
atggggccaaaggaatgtttgctgccaggtggggatactgctggagatatggagaaactg
aagcagttggttcaaaggggaggaatcctgatcacagatagaaaaaagactgaattttca
acaaaagatgctgttcaagatctcaaccgtttgttgcaatcaggaaaggaccgtgtgtct
agtgcagcattacctgaaatggataagcagatgactccagaggaaaaaacagaagccatt
acaanttttcctttaagtagaaactgcagtacactactggatgcgatattcacaaaacct
cttaaagagctaaattgtgatttctccaatttccaaaacatgatagatgaaactttggac
atgaatacggtggaaagtcatgaataccttgtcaaaccttccattgaccccaatcttgct
gaattgagaaaaagaatggataagctggaagaaaaaatgcagggcgtcttgaaaattgca
gccaaggaattaagtttggaagctagcaagagtatcaaattagaatgcaatgcacagttt
ggacattttttcagaattacctacagagaagaaaaggttctgcggaataatgtgaaatat
aagatcttggaaacccagaaaaatggggtgaaattctctaacagtgcattgaaagagatt
aatgaagactatgtgaagaacagaaaagaatatgaagaaatgcaagatgctgtagttaaa
gaaataatcaacgttgcatcagggtataaagaacccatacaaattctcaatgatgtcatt
gcccagctagatgccattgtcagttttgctcatgcatcaaatgcagcaccaataccatat
gtgcgcccagttattctagaaaaagggcaaggaagaattaccttgaaagcttccaggcac
ccctgcattgaagttcaagatgatgttgccttcatccctaatgatgtcacttttgagaag
gacaaacagatgttccacatcattactggaccaaacatgggaggaaaatcaacttacata
cggcagactggggtgattgttcttatggcccaaattggatgttttgtgccgtgtgactct
gcagaagtgactattgttgattgcatcctggctcgagttggagctggagatagtcaactg
aaaggggtatctactttcatggcagaaatgctggagacttcctccatccttaggactgca
actgagcattctttgataatcattgatgagttagggagaggaacatcaacatatgatgga
tttggattggcctgggcaatttctgaatatattgccagcaaaatgaaagcttttgctatg
tttgctactcattttcatgaattgacagccctcgctgatcaaatacccactgtaaataac
ttgcatgttacggcattaacttcaaaggacacactgacaatgttataccgtgtgaaaaaa
ggggcctgtgaccagagctttggtatccatgtagcagaattagcagcctttcccaaacat
gtgattgaatgtgccaaggcgaaagctctggaactggaggacttccagaacattggaata
tctcaggaggaggatgaagaaccagctgccaaaagatgccacagggagaagcaggaggga
gaacaaataattcaagatttcctttctcaagtgaaagcaatgccgttgacagaaatgtct
gaagaagaaatccggaccaaactaaaggagttaaaggactacgttttgaagaaaaataat
tcttttgtaaatggaatcatttcccgcatcaacggtacctcatga
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