Thamnophis sirtalis (common garter snake): 106554393
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Entry
106554393 CDS
T06107
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03030
DNA replication
tsr03410
Base excision repair
tsr03420
Nucleotide excision repair
tsr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
106554393 (RFC1)
03410 Base excision repair
106554393 (RFC1)
03420 Nucleotide excision repair
106554393 (RFC1)
03430 Mismatch repair
106554393 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tsr03032
]
106554393 (RFC1)
03400 DNA repair and recombination proteins [BR:
tsr03400
]
106554393 (RFC1)
DNA replication proteins [BR:
tsr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
106554393 (RFC1)
DNA repair and recombination proteins [BR:
tsr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
106554393 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
BRCT_2
AAA_22
Rad17
RuvB_N
AAA_14
AAA_30
AAA_5
nSTAND3
Zeta_toxin
AAA_16
NPHP3_N
AAA_33
AAA_19
AAA_7
AAA_17
TIP49
RNA_helicase
NTPase_1
Motif
Other DBs
NCBI-GeneID:
106554393
NCBI-ProteinID:
XP_013928520
UniProt:
A0A6I9YY57
LinkDB
All DBs
Position
Unknown
AA seq
1193 aa
AA seq
DB search
MYEKHSYFSQQLFVSLDVGNVCDLGNIYTKADEFRYRQDAKKRSNLMLFYGFLYQDIRKF
FGVVTPGKKPECGIARKEKPQNKERNSGGTSTLKEIKVKSLPREEDFKQKKANKKKRIIY
DSDSEEEVPSIKKSKPPERKLSPNPAKLLKADPVVYVSETDEDEDFVSKKPPPKVQQFEK
PVKATQGTTGASQPDSKPKVKNKPLSPVKLTPTSVIDYFGTVSVQRSEKKLVSSKRKEPS
KDPTINDEAIAKELQLEENSKRERQLHEDEEFAQTLAMLDETPRKKKPRKEEFQQSKSGE
AEKTKQAHKGKLTASALDSQPYSAKDQLHSESVKVSSLHPESSATKEEVDWGNKRGSSKA
SSRLTPPKQKAEAVKIENGASRGENLRKGTATPAGKNISPKTKTPTKVSPEQSKSISPED
SAEKKRTNYTAYRSFLNREGPKALGSKEIPQGGENCLEGMTFVITGIFESIERDEAKSLI
ERYGGKVTGNISKKTNYLVKGRDCGLSKCEKASALGTKVIDEDGLFDLIRNTPGRKSKYE
IAAETEAKRTKSKVEKTSPVTQTHKRKPSPAKLNSDSRKKTFLAENTEPFKSIKQEAGAV
RRGLDFLEDEEEEEKKKQVPKEKQSSARETNKNGGEVLLWVDKYKPTSLKSIIGQQGEQS
CANKLLRWLKNWQKNSLEDKQVKSSKFGSKDDGANSKAALLSGPPGIGKTTTASLVCQEL
GLSYVELNASDTRSKNSLKEVVAESLNNTSIKGFCSGASRSVSAKHVLLMDEVDGMAGNE
DRGGIQELIDLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRVPRPRVEQIKGAMMSIAF
KEGLKVPPPAMNELILAANQDIRQVLHNLSMWCARDKTLTYDGVKEDASKAKKDIKLGPF
DVVRKVFAKGEETSHLSLIDKADLFFHDYSLGPLFVQENYIHVKPAAAGNNLKKELILLS
KTADSICDGDLVDRQIRTRQNWSLLPTQAIYSSVLPGELMRGYLQEFPSFPSWLGKFSST
GKHDRIIQELSMHMSLRTHASKRAVNLDYLPYLRDAVVRPLACQGSEGVRDAVTFMDSYC
LLKEDVENLMEVTSWAGKPSAFSKLDSKVKSAFTRAYNKVSHLTPYSLQTAPKSKRAGSL
DVEMSEELESNEVESEQGSLESDAMIKKKTKPAKPPKAERKEEKKKGKSKKKS
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgtacgagaaacactcgtacttcagccagcagctgttcgtatctctggatgttggaaat
gtttgtgaccttggcaacatctacacaaaagcagatgagtttcggtatcgtcaggatgct
aagaaaagatcgaatttgatgttgttttatggcttcctttaccaggatatccgtaaattc
tttggcgttgtaactccaggaaagaaacctgaatgtggcattgcgagaaaggagaaaccc
cagaataaagagaggaattcagggggaacatcaacgctaaaagaaatcaaggtgaaaagt
ttgcctcgcgaagaggatttcaagcaaaaaaaggcgaataagaaaaagaggatcatttat
gattcagattctgaagaggaggtaccatcaatcaaaaaatctaagccgccagagagaaag
ctttctccgaatcctgctaaactgctaaaggcggatcctgtggtttacgtttcagaaaca
gatgaagatgaggactttgttagcaagaaaccccctccgaaagttcaacagtttgagaag
ccggtgaaggcgactcaagggacgacgggagcctcccagccggattccaaaccaaaagtc
aaaaacaaacccttatctcctgtgaaactgacaccaacgtccgtcattgattactttggg
actgttagcgttcaacggtcagagaagaagctggtttcaagcaaacgaaaagaaccaagc
aaggatcccaccatcaatgatgaggccatcgctaaagaactgcagctggaagagaattca
aagcgggaaagacaattgcatgaagacgaagaatttgcacaaacgttggctatgttggat
gaaacgcccagaaagaaaaagcctcgaaaagaagaatttcagcagtcaaaatcgggtgaa
gcagaaaaaactaaacaggctcacaaagggaaacttaccgcttccgccttagattctcaa
ccttattccgcaaaggatcagcttcattccgaaagtgtcaaggtgtcaagtctccaccca
gaatcttccgctacaaaggaggaagtggattgggggaataaaaggggctcatccaaggct
tcctccaggttaactcctcccaagcagaaagcagaggctgtcaaaatcgaaaacggggcc
tcgagaggagagaacctcaggaaaggaactgcgactccagcaggaaaaaacatttcgccc
aaaaccaagacacccacaaaggtttctcccgaacaatccaagtccatcagtcccgaggat
tctgctgaaaagaagcggaccaattacacggcctacagaagcttcctcaatcgagaaggt
ccgaaggccctcggctcaaaagaaataccacaaggtggtgaaaattgcttggaaggcatg
acgtttgtgattaccggaatctttgaatcgattgaacgggacgaggccaagtccctgatt
gagcgctacgggggtaaagtcaccggaaacatcagcaagaagaccaattaccttgtgaaa
gggcgtgactgtggcctgtccaagtgtgaaaaggcatcggctctagggacgaaagttatc
gatgaagatggcttgttcgacctgatacgaaatacacccggcaggaagtccaagtatgaa
atagcagctgagacagaggcgaagagaacaaagtccaaggtggaaaaaacctccccggta
acgcaaacccacaaaaggaaaccgagccccgcgaagctgaactccgattcccgaaagaaa
accttccttgcggaaaacacggagccttttaaatccatcaaacaggaagccggggcggta
aggagagggctggacttcctggaggacgaggaggaggaggagaagaagaagcaagttccc
aaagaaaaacagagctcagctcgcgaaacgaataaaaacggaggggaagtgttgttgtgg
gtggacaaatacaagcccacctccctcaaaagcatcatcgggcagcaaggcgagcagagc
tgcgctaataaactcctgcgttggcttaaaaactggcagaagaattctttggaagacaaa
caggtcaaatccagtaagtttggaagcaaagacgatggcgctaattccaaagcagctttg
ctttccggacccccgggaataggcaaaaccacaacggcatctttagtttgtcaggaactc
ggtttgagttacgtggagttgaacgcgagcgacactcgcagcaagaacagcctgaaagag
gtggtggccgaatctctgaataacaccagcatcaaaggattctgctcaggggcgtcacgt
tccgtcagcgcaaaacacgtcctcctcatggacgaggtggatgggatggctggcaatgaa
gacagaggcgggatacaggagctaattgaccttattaagcacacaaaaattccaatcatt
tgcatgtgtaacgatcggaaccatcccaagatccgttctctggtccactattgttttgac
ctccgtgtcccgaggccgagggtggaacagatcaagggtgccatgatgtccatcgctttc
aaagaaggattgaaagttccaccaccggcaatgaatgaactcattttggcagctaatcag
gatatcagacaggtgttgcataatcttagcatgtggtgtgccagagacaaaaccttgact
tatgacggtgtcaaagaagacgccagtaaagccaaaaaggatattaagctgggtcctttc
gatgtggtgaggaaggttttcgccaaaggagaggagacttctcacctgtctcttatagac
aaggcagatctgttcttccacgattactctctgggccccctctttgtccaagaaaactac
atccacgtcaagcccgccgctgctgggaacaacttgaagaaagaactcatcctgcttagc
aaaaccgcggacagcatctgcgatggcgatttagttgaccgccagattcgcacacgacaa
aactggagccttcttcccactcaggcaatttattcgagcgtcctgcctggggagctgatg
agaggctatttgcaagaatttccaagtttcccaagttggttggggaaattttcatccaca
ggaaagcacgaccgcatcatacaggagctttccatgcatatgagtctcagaacgcacgct
agtaagagagccgtaaacctggactatctaccctacttgcgagatgcagtggtgagacca
ttggcgtgccaaggctcagaaggagtccgggacgctgtcaccttcatggattcttactgc
ttgttgaaggaagatgtcgaaaacctcatggaggtcaccagctgggcagggaagcccagc
gccttttccaaattggattccaaggtcaaatcggcattcacgcgggcctacaacaaagtc
tcgcatctgacgccgtactccctgcaaactgcgccgaagtcgaaacgcgcgggctcactg
gatgtggaaatgagcgaagaactggaatcgaacgaagtcgagagcgagcaagggagcctg
gaaagcgatgcaatgattaagaaaaagaccaaacctgccaagccgccaaaagcagaaagg
aaagaagaaaagaaaaaaggaaaatcaaagaaaaaaagctga
DBGET
integrated database retrieval system
