Thamnophis sirtalis (common garter snake): 106554565
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Entry
106554565 CDS
T06107
Symbol
VPS16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04140
Autophagy - animal
tsr04148
Efferocytosis
tsr05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
106554565 (VPS16)
04148 Efferocytosis
106554565 (VPS16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
106554565 (VPS16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tsr04131
]
106554565 (VPS16)
Membrane trafficking [BR:
tsr04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
106554565 (VPS16)
Hops complex
106554565 (VPS16)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Motif
Other DBs
NCBI-GeneID:
106554565
NCBI-ProteinID:
XP_013928739
UniProt:
A0A6I9YXH8
LinkDB
All DBs
Position
Unknown
AA seq
558 aa
AA seq
DB search
MSWNLKEDLRDYLVAAAPYGGPIALMKNKKEKSPSSRPVLEIYSASGIQLASVVWKDSPA
MFLGWTTSEELLSVQENGIVLLHSLFGEFKKKVTMTSVSEDKPRVEAEKVGSRRSCAESR
HTRSLREASRVRALHGVGTPMPPLDFCYKPGLSGGRIGACGRRTTDCPKWCRVSCLSLLE
YEPRPGKQVPLLLTMNRRELALTRAIESGDSDLVYTVISRLKDRLPRGDFFMALQNEPVA
LSLYRQSPKGNRMTLGHCDRYKCEYPLSEDSHLVPELDGVRIFSRSTHEFLHEIPEATEE
IFKIASMSPGALLLEAQKEYEKESQKADEYLREIKDQKLLSEAVEQCIKAASYEHSPPIQ
KALLQAASFGKCFIDKFSPENFVETCRDLRVLNAVRDYQIGIPLSFDQYKQLTKEVLLDS
WWILRDILDSILGKMLVLGLLSCCLDRFWWLKISALAEQGAWEDLEKFSKSKKSPIGYLP
FAEISMKYGNRSEAKKYAARVTPEQKVKAFLLVGEFSQAADAAVERKNEAEMMLILSKCT
DATVAAKLEQAKAQLGKK
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgagctggaatttgaaggaagacctgcgagattatttggtggctgcagccccctacggg
ggtcccattgccctgatgaaaaacaagaaggagaaatctcccagctcccggcctgtttta
gagatctactctgcttcgggaatccagctggccagcgtagtgtggaaggattctccggcg
atgttcctgggctggaccaccagcgaggagctgctcagcgtccaagagaacgggatcgtc
cttctccacagccttttcggcgaattcaagaaaaaagtcaccatgaccagcgtaagtgag
gacaagccgagggttgaggcggagaaggtgggttcaagacgcagttgtgcggagtctcgc
cacacgcgaagcctccgggaagccagccgtgttagggctttgcatggcgtaggaacgccg
atgcctcctttggacttctgttataaaccagggttaagtggagggagaattggagcctgc
ggcagaaggacaactgattgtccgaaatggtgtagggtctcctgcttgagcctgctggaa
tatgaaccccggccgggaaagcaggtgccccttttgctgaccatgaacagaagggagctg
gccttgaccagagccatcgagagcggagacagcgacctggtttacaccgtcatctcgcgc
ctgaaggacagactcccccggggcgatttcttcatggctttgcagaacgagcccgtggcg
ttgagtctctatcgtcagtcaccaaaggggaatcgcatgaccttgggacactgcgaccgt
tataaatgcgaataccctctgagtgaggattcgcacctggtcccagagctggacggggtg
cgcattttctctcgctccacccacgaattcctccacgagatcccagaggccactgaggag
atcttcaaaattgcctccatgtcgcccggggccttgctgcttgaagcgcagaaagaatat
gagaaagagagtcagaaagcggacgaatatctgcgtgaaatcaaggaccagaagctgctt
tcggaggcggtggaacaatgcattaaagcagccagctacgaacattccccgcccatccag
aaagctctcctccaggctgcctcttttgggaaatgcttcattgacaaattttcaccggaa
aactttgtcgaaacctgccgagatctgcgggtgcttaatgccgtccgagattaccagatt
gggatccctctcagcttcgatcaatataaacagctgaccaaggaggttttgctggacagc
tggtggattcttcgagacatcttggatagtattcttggcaaaatgttagttcttggtctg
ctctcttgctgtcttgacaggttctggtggctgaagatcagtgccttggcggagcaaggg
gcctgggaagatctggagaagttctccaagtccaaaaaatcacctatcggctacttgccc
tttgcggagatcagcatgaagtacggcaaccggagcgaagccaagaagtacgccgcccga
gtcacccccgaacagaaagtcaaggctttcctcttggtgggggaattcagccaggcggcc
gacgccgctgtggagcgcaagaacgaagcggaaatgatgctcatcctctccaagtgcacc
gatgccaccgtggccgctaaactggaacaggcaaaagctcaactgggaaagaaatga
DBGET
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