Thamnophis sirtalis (common garter snake): 106555148
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Entry
106555148 CDS
T06107
Name
(RefSeq) ATP-dependent RNA helicase DDX3X isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
106555148
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106555148
03041 Spliceosome [BR:
tsr03041
]
106555148
03036 Chromosome and associated proteins [BR:
tsr03036
]
106555148
Enzymes [BR:
tsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106555148
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
106555148
mRNA cycle factors
Common to processing body (P body) and stress granule
106555148
Spliceosome [BR:
tsr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
106555148
Chromosome and associated proteins [BR:
tsr03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
106555148
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
Motif
Other DBs
NCBI-GeneID:
106555148
NCBI-ProteinID:
XP_013929400
UniProt:
A0A6I9Z0L2
LinkDB
All DBs
Position
Unknown
AA seq
714 aa
AA seq
DB search
MSHVAVENALGLDQQFAGLDLNSSDSQSGGGTASKGRYIPPHLRNREASKQDSPSWDSRG
GNGYMNGYDRDSRMNGYDRDRGVFGSRGGSGRDDRGFDGGWNAARDRDAYSSFGARSERG
SGKSSFFTDRGNGSRGRYDDGGGRCSSDFDGIGSRGDRSCFGRFDRSGNNRWCDKNDEDD
WSKPLAPSERMEQELFAGGNTGINFEKYDDIPVEATGNNCPPHIESFSDVDMGEIIMGNI
ELTRYTRPTPVQKYAIPIIKDKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGDALRAMK
ENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSKVRPCVVYGGADIGQQIRDLER
GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEKDTMPPKGV
RQTMMFSATFPKEIQMLARDFLEEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDLL
NATGKESLTLVFVETKKGADSLEDFLYNEGYACTSIHGDRCQRDREEALHQFRSGRSPIL
VATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNINITKD
LLDLLVEAKQEVPSWLENMAYEQHHKGGSSRGRSKGRFSGGFGARDYRTSSSSSSSGGGS
SFGSSRASSGRSGGTGGGGGHGGSRGFGGGYGGFYNSDGYGGNYNSQGVDWWGN
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggcagtggaaaatgccctcggtctagatcagcagtttgctggtctagac
ttgaattcctcagactctcagagtggaggaggaacagcaagtaaaggccggtacattcct
cctcatttacgaaatagagaagcttcaaagcaggattcccccagctgggactctcgtgga
ggtaatggctatatgaatggatatgatcgtgacagccggatgaatggctacgatcgtgat
cgcggtgtgtttggatccagaggaggatctggacgtgatgacagaggatttgatggtgga
tggaatgctgccagagacagggatgcatatagtagctttggtgcaagaagtgaacgtgga
tcaggaaaatcaagtttctttactgaccgtggcaatggctcaagaggaagatatgatgat
ggcggtggaagatgcagtagtgattttgatggtattgggagtcgtggtgataggagttgc
tttggtcgatttgatcgtagcggaaacaatcgttggtgtgataaaaatgacgaagatgat
tggtcaaaaccacttgccccaagtgaacgtatggaacaggagctgttcgctggggggaat
acaggcattaactttgaaaaatatgatgacattccagttgaggcaacaggcaacaactgt
cctccacacattgaaagttttagcgatgttgacatgggggaaattatcatggggaacatt
gaactcacccgctacactcgacctactcctgttcagaaatatgctattcctatcatcaaa
gacaaaagagatctgatggcttgtgcccagacaggttctgggaaaactgctgcattcctt
cttcccatattgagtcagatatatacagatggtccaggtgatgctttgagagccatgaag
gaaaatggaagatatgggcgtcgtaaacaatacccaatttcattagttttggctccaaca
agagaattggcagtgcagatatatgaagaagctagaaagtttgcctatcgttccaaagtc
cgtccttgtgttgtatatggtggcgctgacattggccaacagatacgtgacttggaacgt
ggttgccatttgcttgtggcaactccaggccgccttgtagatatgatggagaggggaaag
ataggcctggacttctgcaaatacttggttttggatgaagctgatcgtatgcttgacatg
ggttttgagcctcagattcgtcgtattgttgaaaaagatactatgccaccaaagggtgtc
cgtcagacaatgatgtttagtgctacttttccaaaggaaatccagatgcttgctcgtgat
ttcttggaggaatatatttttctggctgttggccgagttggctctacatctgagaacatc
acacagaaagtagtgtgggtggaagacttagacaaaagatcatttctgcttgatctcttg
aatgccacaggcaaggaatccttgactctggtgtttgtagagactaaaaagggagctgat
tctctggaggatttcctgtacaatgaaggatatgcttgcaccagtattcatggtgatcgc
tgtcagcgagatagagaagaagcattacatcagttccgctctggcagaagtcccatcttg
gttgccactgcagtagcggcacgaggactggatatttccaatgttaaacatgtcataaat
tttgatttgccaagtgacatagaagaatatgtgcatcgcattggccgtacgggccgtgta
ggaaatcttggtcttgccacgtcattttttaatgacaagaacataaatatcacaaaagac
ttgttagatctgcttgttgaagctaaacaggaagtaccatcttggctagaaaacatggca
tatgagcagcatcataagggcggaagcagtcgtgggcgttccaaaggccgcttcagtgga
ggcttcggtgccagagattatcgaacaagcagcagcagcagcagcagcggtgggggcagt
agttttggcagcagtcgtgcaagtagtggtcgcagtggtggtactggtggtggtggtggt
cacggaggtagcagaggatttggaggtggctatggcggcttctacaacagtgatggatat
ggaggaaactataactctcagggggtagattggtggggcaactga
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