Thamnophis sirtalis (common garter snake): 106555271
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Entry
106555271 CDS
T06107
Symbol
SF3B3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106555271 (SF3B3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsr03021
]
106555271 (SF3B3)
03041 Spliceosome [BR:
tsr03041
]
106555271 (SF3B3)
03036 Chromosome and associated proteins [BR:
tsr03036
]
106555271 (SF3B3)
Transcription machinery [BR:
tsr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
106555271 (SF3B3)
Spliceosome [BR:
tsr03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
106555271 (SF3B3)
Complex B
106555271 (SF3B3)
Complex C
U2 SnRNP specific factors
106555271 (SF3B3)
Chromosome and associated proteins [BR:
tsr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
106555271 (SF3B3)
TFTC complex
106555271 (SF3B3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
106555271
NCBI-ProteinID:
XP_013929556
UniProt:
A0A6I9Z0D8
LinkDB
All DBs
Position
Unknown
AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGISYAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG
IIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNIFEKIHQETFGKSGCRRIVPGQY
LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDDEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILSCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGCAEKQDELGERSSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPESSNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGAPKAGNGQWASVVRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFANTG
DDWHVLVGVAKDLILNPRSVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVL
IGVGKLLRVYDLGKKKLLRKCENKHIANSICGIQTVGHRVIVSDVQESFIWVRYKRNENQ
LIIFADDTHPRWVTTACLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgttcctgtacaacttaactctccaacgtgccactggcatcagctatgccatccacggg
aatttttcaggtactaaacagcaagaaattgttgtttcccgtgggaaaatcttggaattg
cttcgtcctgatccaaacactggaaaggttcataccttgttgacggtagaggtttttggc
atcattcgctccctcatggcctttagattaactggtgggaccaaggactacattgtggtg
ggcagtgactcaggccgcatcgtcatcctggaataccagccttctaaaaacatatttgag
aaaattcatcaggaaacctttggcaagagcggctgccgcagaattgttcctggacagtac
ttggctgtggatcctaaagggcgggctgtcatgatcagtgccattgagaagcagaaactt
gtgtacattctgaacagagacgcagctgctcggctcaccatttcttccccattggaagcc
cacaaggccaacaccttggtttatcatgtggttggagtcgacgttgggtttgaaaatccc
atgtttgcttgcctggaaatggattacgaggaagctgacaatgaccccactggggaagct
gcagcaaacacccagcagacactgacattttatgagttagacttaggtttgaaccacgtg
gtcaggaaatacagcgaaccgttggaagaacacggcaattttctaataacagttcctgga
ggctccgatggtccgagtggggtactgatttgctctgaaaactacattacctacaaaaac
tttggtgaccagccagatattcgatgtccaattcccaggaggaggaatgatttggatgac
cctgagagaggcatgatctttgtttgctctgctacccacaagaccaagtctatgtttttt
ttcttagctcaaacagagcaaggtgatatttttaagatcaccttggagactgatgaggat
atggtcacagaaattcggctgaagtattttgacaccgttcctgtggctgcagccatgtgt
gtgctgaaaacgggctttctttttgtggcttctgagtttggaaaccactacctctaccaa
attgcccaccttggagatgatgacgatgagcccgagttctcctctgcgatgcctctggag
gagggggacactttcttcttccagccccggcctcttaaaaacctggtattggtggatgag
ctggacagtctctctccaattttgtcttgccagattgctgatcttgcaaacgaagatacc
cctcagctgtatgtggcatgtggaagggggcctcgttcgtctctgagggtcctgagacac
ggcctggaggtgtctgaaatggcagtctccgagttgcccggtaatcctaatgctgtgtgg
acagtgaggagacatattgaagatgaatttgatgcttacatcattgtgtctttcgtcaat
gccaccctagtcctgtctatcggagaaacagtggaggaagtgactgactcagggttcctt
ggtaccacacccaccttgtcctgctcattgctgggagatgatgccttggtgcaggtttat
cctgatggcatcaggcacataagagcagataaacgagttaacgaatggaaaacacctggg
aaaaaaaccattgtcaaatgtgctgtgaatcagagacaagtggtgatcgcgctgactgga
ggagagctggtttacttcgagatggatccatctgggcagctgaatgaatacacggaaagg
aaggagatgtcggccgatgttgtgtgcatgagtttggcaaacgttccacctggagagcag
cgctcccgtttccttgcggttgggctggtagacaacactgtacgaatcatttcccttgat
ccctcagactgtctgcagcctctgagcatgcaggctctccctgcacagccggaatccttg
tgcatcgtggaaatgggttgcgcggagaagcaagatgagctgggagaacggagctccatt
gggtttttgtacctgaacattggcttacagaatggtgtgctcctccggactgtccttgat
cctgtcaccggtgatctgtctgatacaagaaccaggtaccttgggtcccgccctgtgaag
ctgttcagagtccggatgcaaggccaggaagcggtgctggcgatgtccagccgctcttgg
ctgagctactcctaccagtcccgcttccacctcacccccctctcctacgagaccctggag
tttgcctctggcttcgcctcagagcagtgcccggaggggattgtcgccatttctaccaac
accctgaggattttggcgctggagaagcttggcgcagtcttcaaccaagttgccttccca
ttacaatacacgccccgcaagtttgtgatccaccccgagagcagcaatctgatcatcatc
gagaccgaccataatgcttacaccgaggcaaccaaagcccagcggaagcaacagatggcc
gaggaaatggtggaagctgcaggggaagacgagagggaacttgccgcagagatggcggct
gctttcctgaatgagaaccttccggagtccatttttggggctcccaaagcaggaaacggg
cagtgggcctcggtagtccgggtgatgaaccccatccagggaaacactttggaccttgtg
cagctggagcagaatgaggctgccttcagtgtggctgtgtgccgctttgccaacacgggc
gatgactggcatgtcttggtgggcgtggccaaagacctcattctcaacccgcgttcggtt
gccggagggtttgtctacacttacaagctggtgaataatggtgagaagctggagttcctg
cacaagacgccggtggaggaggtgcctgcggctattgcccccttccaagggagagtgctg
atcggtgtggggaagctgctgcgagtctacgatttgggcaagaagaagctgctgcggaag
tgtgagaataagcacattgccaactccatttgtgggatccagacagtgggacacagagtg
attgtgtctgatgtccaggaaagcttcatctgggttcgatacaagagaaatgaaaaccag
ctgatcatctttgcagacgacacccaccctcgctgggtcaccactgcctgcctcctggac
tatgacacagtggctggagctgacaagtttggcaacatctgtgtggtgaggctgccaccc
aatacgaacgatgaggtcgatgaggacccgactggcaacaaggctctgtgggacaggggc
ctcctcaatggcgcatcccaaaaagcagaggtgatcatgaactaccacgtaggagaaacg
gtgctgtctctgcagaagaccaccctcatccccggaggttccgagtcgcttgtttataca
acgttgtctggaggaatcggcatcctggttccgtttacatcccacgaggatcacgacttc
ttccagcatgtggagatgcacctgcgctctgagcacccacctctctgtggtcgagaccac
ctcagcttccgctcctattacttccccgttaagaatgttattgatggagacctctgcgag
cagttcaactccatggagcccaacaagcagaagaacgtgtctgaagaactggaccggact
ccgccagaagtctcaaagaaactagaggacatccgtacccgttatgctttctga
DBGET
integrated database retrieval system
