Thamnophis sirtalis (common garter snake): 106555287
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Entry
106555287 CDS
T06107
Symbol
ATG16L1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04136
Autophagy - other
tsr04140
Autophagy - animal
tsr04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
106555287 (ATG16L1)
04136 Autophagy - other
106555287 (ATG16L1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
106555287 (ATG16L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tsr04131
]
106555287 (ATG16L1)
03029 Mitochondrial biogenesis [BR:
tsr03029
]
106555287 (ATG16L1)
Membrane trafficking [BR:
tsr04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
106555287 (ATG16L1)
Others
Specific organelles associated proteins
Auto phagosome
106555287 (ATG16L1)
Mitochondrial biogenesis [BR:
tsr03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
106555287 (ATG16L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
ATG16
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_DCAF4
WDR90_beta-prop_4th
eIF2A
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_NWD2_C
Beta-prop_HPS5
Beta-prop_WDR19_1st
KASH_CCD
Beta-prop_Vps41
Beta-prop_SPT8
CCDC93_CC
Fez1
DUF2332
Lipoprotein_6
HEF_HK
Motif
Other DBs
NCBI-GeneID:
106555287
NCBI-ProteinID:
XP_013929617
UniProt:
A0A6I9YZ77
LinkDB
All DBs
Position
Unknown
AA seq
623 aa
AA seq
DB search
MSVGLKTSSFPTWKRHILDELKRRDRLQRQAFEEIILQYNKLLEKSDFHSVLADKLQVEK
YDLPSRHEISPGHDGARNDAHLQEVAQLRIKHQEELTELHKKRGELAQTVIDLNNQIQQK
DKEIQINNVKIAEYLQKISELETECHDLCNKLQDLEQANQTLKDEYDALQITFNALEEKL
RKTTEDNQELVTRWMAEKAQEANRLNAENEKDLRRRQARLQKELAEAAKEPLPIEQDDDI
EVLADETSDPAEETSPVRAVTRTASKRLSQPTGGLLDSINNIFGLSESPLLGHHSSDTAR
RRSLSSCPIPQDNTDEHPTASREVRLPNTAVYVFDAHDGEVNAVQFSPGSRLLATGGLDR
RVKIWDVFGDKCEFKASLSGSNAGITSVEFDNAGSYLLAASNDYASRIWTMDDHRLRHTL
TGHSGKVLSAKFLLDKARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDLVCTEQCVMS
GHFDKKIRFWDIRTESVIQEMELLGRITALDLNPERTELLTCSRDDLLKIIDLRINAVKH
TFSAPGFKCGSDWTRVVFSPDGNYVAAGSADGSLYIWSVLTGKVERTLSKHHSNPINAVA
WSPSGAHVVSVDKGNKAVLWSEF
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgtctgttggacttaagacctcgagcttccccacctggaagcggcatatcctggacgaa
ctgaagcgtcgagaccggttacaaagacaggcctttgaagagatcatcttgcaatataat
aagctcttggagaagtcagatttccattcagtgctggctgacaagctacaagtggaaaag
tatgatttgccaagccggcatgagatcagcccaggacatgatggtgcaagaaatgatgct
catcttcaagaagtcgctcaattaaggattaaacatcaagaggaattgacagagctgcac
aagaaacggggcgagttggctcaaactgtgattgacctaaacaatcaaatacaacagaag
gacaaagaaatacaaataaataatgtcaaaattgcagaatatttacagaagatatctgaa
ctggagactgagtgccatgatttatgcaacaagcttcaagatcttgaacaagctaatcaa
actcttaaggatgaatatgatgctctccaaatcacctttaatgctcttgaagaaaaatta
agaaaaaccactgaagataaccaagaactggtaacccgttggatggcagaaaaggctcaa
gaagctaatcgcctcaatgcagaaaatgagaaagatttaagaagaaggcaagctcggctt
cagaaagaactagcagaagctgctaaagaaccactgccaattgaacaggatgatgatatt
gaagtccttgctgatgaaacctccgatccagctgaggagacatctccagttcgtgctgtc
acacgaacagcaagtaagcgactctcccagcccactggaggccttctggattctatcaat
aatatctttggtctgtctgagtctccccttttgggacatcactcttctgatactgccagg
agacgttctttatcctcatgtcctatccctcaagataatactgatgaacatcctactgca
agcagagaggtccgactacctaacacagcagtgtatgtctttgatgcacacgatggggag
gttaacgcagtccaattcagccctggttctcgtttattagcaacaggaggcttggaccgg
agggtcaaaatttgggatgtttttggtgataagtgtgaatttaaagcctccctatctggc
agtaatgcagggattactagtgtagagtttgataacgctggttcctacttattagcagct
tcaaatgactatgccagtaggatctggacaatggatgatcatcggttacgtcacacgctc
acggggcatagtggaaaggttttatcagcaaaattccttctggacaaagctcgcattgta
tctgggagtcatgacagaacactcaagctatgggacctgcgcagcaaagtctgtataaaa
acagtatttgctggctccagctgcaatgatcttgtctgtacagaacaatgtgtaatgagt
ggacactttgataagaaaattcgcttttgggatattagaactgaaagtgtgatacaggaa
atggaattgctgggaaggattacagctctagatctcaaccctgagagaacagagcttctt
acatgttctcgtgatgatctgttgaaaattattgatctcagaatcaacgctgtcaaacat
acattcagtgctccaggatttaaatgtgggtccgattggactagagttgtattcagccct
gatggaaattatgttgcggctggctcagcagatggatcactttatatatggagtgtgctc
actggaaaagtggaaaggacactttccaagcatcacagcaatcccatcaatgctgtggca
tggtcaccatctggagcccatgtggtcagtgtggacaaaggaaacaaggcggtgctgtgg
tctgaattttga
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integrated database retrieval system
