Thamnophis sirtalis (common garter snake): 106555415
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Entry
106555415 CDS
T06107
Name
(RefSeq) nuclear pore complex protein Nup88-like
KO
K14318
nuclear pore complex protein Nup88
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106555415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106555415
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
106555415
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup88
FliJ
Motif
Other DBs
NCBI-GeneID:
106555415
NCBI-ProteinID:
XP_013929735
UniProt:
A0A6I9Z1M5
LinkDB
All DBs
Position
Unknown
AA seq
644 aa
AA seq
DB search
MAAAAMSPGLGDHWWAELPRHAVLNRLKEQASEAGPETEQTRPVLPWDLMFGIGGELFLW
DRERAAFCVLSLRHLGDDPDSLASYQILLCINSPFFEVYQTVLSPLQQHVALIGTKGLMV
LELPKRWGKNSEFEGGKSTINCSTIPIAERFFTSSSSLTLKHAAWYPSETLEPHVVLLTS
DNTIRIYSLSSPQTPVKMITLSDADEETLRLNKGRTYTALIGETAVAFDFGPLAVLPKNV
TGQRQKEDVLAYPMYILYENGETFLIYINLLHSTSNLGKLLGPLLMYPAAEDNYGYDACA
VLCLPCVPNILVIATESGMLYHCVVLEGEDDDEQMSVKSWDSRADLIPSLYVFECVELEL
ALRLASREGEEPIESDFSCPMKLHRDPKCSSRYHCTHDAGVHSIGLPWINKLHKFLGSDE
EDKDSLQELGANQKCFVEHILCTKPLPCRQPAAIRGFWIVSDILGPTMVCITRTYECITR
PLLSTVHPTCPPLLCTKEEPQTSTTPLRILAESQDSFERHIRNILCRTSANPLLLKAADK
ESSPPPEECLQLLSRATQVFREEYILKQDLAREEIQRRVKLLREQKKKQLEDLLCCGGER
KNLREMAERLADKYEEAKEKQEDIVNRKYKIPLLFPHEVSKGRK
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggctatgtcgccgggtttaggagaccattggtgggccgaactgcctcgc
catgccgtgctgaatcgcctgaaggagcaggcctctgaagccgggccggagacggagcaa
accaggccagtcctcccgtgggatctgatgtttggcatcggcggagaactcttcctgtgg
gaccgagaacgtgccgccttctgcgtcctcagcctgaggcatcttggcgacgacccggac
agtttggcctcataccagattcttctctgcataaattcacccttctttgaagtgtatcaa
actgttttaagtcctttgcaacagcatgtagctctcataggaacaaaaggattaatggtg
ttggagttacctaaacgttggggaaagaattctgaatttgaaggtggaaaatcaaccatt
aattgtagcactatacctattgctgaaaggttcttcaccagttcatcatctctgaccctg
aagcatgctgcttggtaccccagtgagactctggagcctcatgttgtgctattaacatcc
gacaacacaataagaatttatagtttgagttcaccccagacacctgtgaaaatgataact
ctttcagatgctgatgaggaaacattgagacttaataaggggagaacatatacagcattg
ataggagagactgcagtggcatttgactttggacctctagcggtacttcctaagaatgta
actggacagagacagaaagaggatgtgctggcatatcctatgtatatcctgtatgaaaat
ggagagacgtttctgatctacattaatctcttgcacagcaccagtaatcttggcaagctg
ctgggcccattgctgatgtatcctgcagctgaagacaattatggctacgatgcttgtgca
gttctctgccttccctgtgttcctaacatcttagtgattgctactgaatcagggatgctt
tatcattgtgtggtactagagggagaagatgatgatgaacagatgtctgtcaagtcttgg
gattcccgagctgacctcattccatcactctatgtgtttgagtgtgttgaattggaactt
gctctgagactagcttccagagaaggagaagaacctatagaatcagatttctcctgtcca
atgaaattgcacagagatcccaaatgctcttctcgctaccactgcacacatgatgctggt
gtacatagtattggactcccctggatcaacaaactacataaattccttggttctgatgaa
gaagacaaagacagtttgcaagagcttggggcaaatcagaagtgctttgtggagcatatc
ctgtgcaccaagcctctaccctgcagacaacctgctgcaattagagggttctggattgtc
tcggatattctgggcccgacaatggtttgcatcaccaggacctatgaatgcattaccagg
cctcttctttccacagtccacccaacgtgccctccacttctgtgcaccaaggaagagcca
cagacgtctaccacacctctccgcatcctagctgaatcacaggactcctttgagagacat
atccggaacatcttgtgtcgcacctctgcaaatccattgttgctgaaagctgcagataaa
gagtcttcccctcccccagaagaatgccttcagcttctaagcagagccacacaagttttc
cgggaagaatatattctaaaacaggacctggctcgagaagaaatccagcgaagagtaaaa
ttgctgcgtgaacagaaaaaaaaacagctggaggatctactctgctgtggaggagaaagg
aaaaacttgagggagatggcagagcgtttggctgataaatatgaagaagccaaagagaaa
caagaggatattgtgaacaggaagtacaaaattcccttactttttccccacgaagtatca
aaagggcggaagtga
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