Thamnophis sirtalis (common garter snake): 106555659
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Entry
106555659 CDS
T06107
Symbol
LSM1
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106555659 (LSM1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106555659 (LSM1)
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106555659 (LSM1)
mRNA degradation factors
5'-3' decay
Lsm complex
106555659 (LSM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
zf-CCCH_6
Nicastrin
Motif
Other DBs
NCBI-GeneID:
106555659
NCBI-ProteinID:
XP_013930024
UniProt:
A0A6I9Z148
LinkDB
All DBs
Position
Unknown
AA seq
174 aa
AA seq
DB search
MPSILQFHAGHIGQQAHCPTFNLEAGVANLFYYLLTSLEHSCTETQRWNVAACSFYTCVT
ATHFITLSIFVSFLLPELSANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEIDL
EKESDTPLQQVSIEEILEVQRVEQQTKQESDKLKMQALKERGLSIPKADTLDEY
NT seq
525 nt
NT seq
+upstream
nt +downstream
nt
atgcctagcattctgcaatttcatgctggccatataggacagcaagcccattgtcctaca
ttcaacctggaagctggtgttgctaatttgttttactatttgcttacctctttagaacac
agttgcacagaaacacaaaggtggaacgttgcagcttgttccttttacacgtgtgttaca
gccacacatttcatcactctttccatctttgtttccttccttctccctgaactttcagca
aatctggttttgcaccaaacagtggagcgcattcatgtgggcaaaaagtatggtgacatc
cctcgtggcatcttcgtagtcagaggcgaaaatgttgtcctcctgggagaaattgacctg
gaaaaggaaagtgacacccctttgcagcaagtctcgatagaggaaatcttggaagttcaa
cgggtagagcagcaaacgaagcaagaatcagacaagttaaaaatgcaagcgctgaaggag
cggggcctctccattccaaaggctgatacattagacgaatactaa
DBGET
integrated database retrieval system
