Thamnophis sirtalis (common garter snake): 106555661
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Entry
106555661 CDS
T06107
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03013
Nucleocytoplasmic transport
tsr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106555661 (UPF2)
03015 mRNA surveillance pathway
106555661 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106555661 (UPF2)
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106555661 (UPF2)
mRNA cycle factors
P-body specific factors
106555661 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
106555661
NCBI-ProteinID:
XP_013930028
UniProt:
A0A6I9YZ81
LinkDB
All DBs
Position
Unknown
AA seq
1180 aa
AA seq
DB search
MPAERKKSASMEEKETPLSNKEKEFGERRSVSSRDRPKEDVRLGMKREMLKPSEDKKKKM
EEEKRKKDEKEWKKKEDEKIKSEEEQKRKEEEEKQKLEEEEKKKQEEEMKLQQEEAAAKL
KEKEEAHQLHQEAWERHQARKELRSKNQNASESRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKSIINADRET
HTHVSVVISFCRHCGDDIAGLVPRKVKSAADKFSLSFPPSEIISAEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRHRILFETELKETKENKDISVTEDLELELENLDINDETLD
LDCGEEAEDLTKKLLDEQGKKQGADSTGAENSDGKQAARKQEDEETSTGSHLKLIVDAFL
QQLPNCVNRDLIDKAAMDFCMNMNTKANRRKLVRALFIVPRQRLDLLPFYARLVGTLHPC
MSDVAEDLCSMLKGDFRFHVRKKDQINIETKNKTVRFIGELTKFKMFSKSDTLHCLKMLL
SDFSHHHIEMACTLLETCGRFLFRSPDSHLRTSVLLEQMMRKKQAMHLDARYVTMVENAY
YYCNPPLAEKTVKKKRPPLQEYIRKLLYKDLSKVTTEKVLRQMRKLPWHDHEVKDYVICC
MINIWNVKYNSIHCVANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSA
KFLGELYNYRMVESAVIFRTLYSFTLFGVNSDGTPSLLDPPEHLFRIRLVCTILDTCGQY
FDRGSSKRKLDCFLVYFQRYVWWKKSLDVWTKDHPFPIDIDYMISDTLELLRPKIKLCNS
LEESMRQVQELEREFLIKLGLMNDKDSKDSMTEGENLEEDEDEEEGGVEIEEQSGNESEI
NEPEEEEGSENDDDEGEEEEEENTDYLTDSNKENETDEENTEVMIKGGGLKRVPCAEDED
FIQALDKMMLENLQQRSGESVKVHQLDVAIPLHLKSQLKKGPPLGGGEGESESGDTMPFV
MLTRKGNKQQFKILNVPMSSQLAANHWNQQQAEQEERMRMKKLTLDINERQEQEDYQEMM
QSLAQRPAPANTNRERRPRYQHPKGAPNADLIFKTGGRRR
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcggaagaagtcggcgagcatggaagaaaaagagacacccttaagtaac
aaagagaaggagtttggggagaggcggtcagtgagcagccgggacaggcccaaagaggat
gtcaggctgggcatgaagagggagatgctcaagccatccgaagataagaagaagaaaatg
gaggaggagaagaggaaaaaggacgagaaggagtggaagaagaaagaggacgagaagata
aaatcggaggaggagcaaaagaggaaggaggaggaggagaaacaaaagcttgaagaggag
gagaagaagaagcaagaggaagagatgaagctgcagcaggaggaagcggctgccaagttg
aaagagaaagaagaggcccaccagctgcaccaggaggcttgggagcgccaccaagcccgg
aaggagcttcgaagcaagaaccagaacgcctcggaaagccgcccggaggagaacttcttc
agcaggctggattccagcctgaagaagaacacggccttcgtgaagaagctgaagaccatc
accgagcagcagagggactccttgtcccatgacttcaacggcctcaacttgagcaagtac
atcgccgaggccgtggcctccatcgtggaggccaagctgaagatctccgatgtcaactgc
gccgtgcacctctgctccctcttccaccagcgctacgccgacttcgccccctcgctgctc
caggtctggaagaagcacttcgaagccaggaaagaggagaaaacgcccaacatcaccaag
ctgaggaccgacctgcgcttcatcgccgagctgaccatcgtcgggatcttcaccgacaag
gagggcctctccctcatctacgagcagctgaagagcatcatcaacgccgaccgggagacc
cacacccacgtctccgtggtcatcagcttctgccggcactgcggggacgacatcgcgggc
ttggtgcccaggaaggtgaaaagcgcggcggataagttcagcctgagcttcccccccagc
gagatcatcagcgcggagaagcagcagcctttccaaaacctgctgaaggaatatttcacc
tcgctgaccaagcacttgaaaagggaccacagggaactgcaaaacattgaaaggcagaac
agacatcgaattctttttgaaacagagctaaaagaaactaaggaaaacaaagatatatcc
gtcacggaagatctagaactggaactagaaaacttggatattaacgatgagacccttgat
ctagattgcggggaggaagcagaagacctcacaaaaaaacttcttgacgaacaaggcaag
aaacagggagcagatagcaccggagctgaaaatagtgacggaaagcaagctgcaagaaaa
caagaagatgaagaaaccagcacaggatcgcacctaaaacttatagtagatgcttttctt
cagcagctccccaattgtgtaaatagagacctcatagacaaggcagccatggatttctgc
atgaatatgaacaccaaggctaaccgaaggaaattagtccgggcccttttcatcgtgccg
cggcagaggctggatttgctgcctttctatgcacggctagttggcacgttgcacccctgt
atgtccgacgtagcagaagacctctgttccatgctgaagggggacttcagatttcacgtg
agaaagaaggaccagatcaacatcgagacaaagaacaaaaccgtgaggttcattggagag
ctaacgaagtttaagatgttctccaaaagtgacacgctgcattgtttaaagatgctcctg
tccgacttctcccatcaccatatcgagatggcctgcactttgttagagacctgtggtaga
ttcctcttcaggtctccggactcccatttgaggaccagcgtccttttggagcaaatgatg
cggaagaagcaagcgatgcaccttgacgcacgctacgtcacgatggtggaaaacgcctac
tactattgtaaccctcccctagcggagaaaacggtgaaaaagaaacgccctcccctccag
gaatacattcggaaactgctgtataaggatctctccaaagtcaccactgaaaaggtgctg
agacaaatgcgcaaactgccttggcatgaccacgaagtgaaagattacgtgatatgctgc
atgatcaacatttggaatgtgaaatataacagcattcactgtgtagccaatctcctggca
ggactggtcctttaccaagaggatgttggcattcacgtggtggacggagttctagaggat
attcgattagggatggaggttaatcagcccaaatttaaccagaggaggatcagcagtgct
aagttcctcggcgagctgtacaactacagaatggtcgaatcggcggtaatctttcggact
ctgtactcattcacgttgtttggggtgaactccgatggcacgccgagtctcctggaccct
cctgaacatctttttcgaattagactggtctgcaccatcctggacacctgcgggcagtac
ttcgataggggatccagcaagagaaagctggactgcttcttggtctactttcagaggtat
gtttggtggaagaaaagcctggatgtatggacaaaagatcaccccttccctatagacatt
gactatatgatcagcgatacgttagaactcctgagaccgaaaataaaactttgcaattct
ctggaagaatccatgaggcaggtacaagaactggaacgggaattcttaatcaaactaggt
cttatgaatgacaaagattctaaggattctatgactgaaggagagaacctggaggaggat
gaggacgaagaggaaggtggagtagagattgaagaacaatctggaaatgaaagcgaaata
aacgagccagaggaggaggagggctcggagaatgatgacgacgaaggagaagaggaagag
gaagaaaatacagattatcttactgattctaataaggagaacgaaacggacgaagagaac
acggaagtaatgattaaaggaggtggactgaaacgggtcccctgcgccgaagatgaagat
tttattcaggcattggataaaatgatgctggaaaatttacagcaaaggagcggagagtcg
gtgaaagtgcaccagttggacgtggccatccctctgcacctcaagagccagctgaagaaa
ggacctcccctggggggtggggagggggagtctgaatccggagacaccatgcctttcgtc
atgctgacccggaaagggaacaagcagcagttcaaaatcctgaacgtgcccatgtcctcc
caactggccgcaaaccactggaaccagcagcaggccgagcaggaagagcgcatgaggatg
aaaaagctaaccttggacatcaacgagcggcaggaacaggaggactatcaagaaatgatg
caatccttggctcagcggccggctccagcaaatacaaaccgagaacggcgacctcggtac
cagcatcctaagggagcacctaatgccgatctcatctttaaaactggtggaaggaggcgt
tga
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integrated database retrieval system
