Thamnophis sirtalis (common garter snake): 106555738
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Entry
106555738 CDS
T06107
Name
(RefSeq) protocadherin-11 X-linked-like isoform X1
KO
K16498
protocadherin delta 1
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
106555738
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tsr01009
]
106555738
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tsr04515
]
106555738
Protein phosphatases and associated proteins [BR:
tsr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
106555738
Cell adhesion molecules [BR:
tsr04515
]
Cadherins
Protocadherins
106555738
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
K319L-like_PKD
Fibulin_C
TMEM154
Cadherin_4
Ion_trans_2
DUF6249
Big_9
Motif
Other DBs
NCBI-GeneID:
106555738
NCBI-ProteinID:
XP_013930109
UniProt:
A0A6I9Z1D9
LinkDB
All DBs
Position
Unknown
AA seq
1026 aa
AA seq
DB search
MDLLSGTYLLAVLLVCVVFQSGAQEKNYTVREELPENVLIGNLLKDLNLTLDPDVPLSSP
LQFKLVYKTGDVPLVRVEENTGEIFTTANRIDREKLCSGIFSENRCFYEVEVAVLPDEVF
RLVKIRFLIEDINDNAPLFPSTVINISIPENTAINSRYSVPSAVDPDIGVNGIQHYELLK
PKTTSKRTFGSITNEQGQNVFGLDIIETPEGDKWPQLIVQQILDREQKDTYVMKIKVEDG
GNPPRSSTAILQVTVTDVNDNRPVFKENDIEVSVPENAPVGTSVSQLHATDADLGSNAQI
HFYFSSQISSLAKRLFAIDNITGLITVKEPLDREESPVHKLTVLASDGSSTPSRATVTVN
VTDINDNIPSIDTRYIINPVNGTVLLSEKAPLNTKIALITVMDKDADLNGKVTCFTDHDV
PFRLKPVFDNQFLLETATFLDYEATREYAIKIVASDSGKPPLNQSAMLLIKIKDENDNTP
VFTQPVIGLSIPENNAPGTQLTKISATDADSGRNAEISYMLGLDAPPIFNLDRRTGILTA
VRKLDREKQDRYSFTVLAKDNGMPPLQTNATVTVSVLDQNDNSPAFTHNEYNFYVPENLP
MYGTVGLITVTDADSGENAIVTLSILNGRDNFIIDPLTGVIRPNITFDREQQGSYTFQVK
AVDGGRLPRTSTAKVTINVVDVNDNRPVFVTPSTNYSYDLVPMSASPGSVVTKVFAVDND
TGMNAELRYSIIGGNSRGLFMIDQLTGNVTLKEKVISADHGLHRLVIKVNDLGQPESLYT
IALVHLFVNETVTNGSYVQELVRRNMETPVGQNVGDGDITPQTNDYVKIIIAIIAGTMTV
ILVIFVTALVRCRQTPRHKVVQKSKQSGEWVSPNQENRQIKKKKKKKKRSPKSLLLNFVT
IEESKPDDPGHEHINGTLDIPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSATPQPT
FQIKPETPVPPKKHHVIQELPLDNTFVVGCDSLSKCSSSSSDPYSVSECSCQGGFKAPGS
VHTRQL
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atggacttgctttctggaacttacctattggcagtcttactggtctgcgttgtatttcag
tcgggggcccaggagaagaattacactgtgagggaggagttaccggaaaatgtcctcatt
ggcaatttgctgaaggatctcaacctgacccttgaccccgatgtgcccctttcgtccccg
cttcaattcaagcttgtgtacaagaccggcgatgtccccctcgtccgcgtggaggagaac
accggagaaatattcaccacggccaaccgcatcgaccgggaaaagctttgctctggcatt
tttagtgagaaccgttgtttttatgaggtggaagtcgcagttcttcctgatgaggtcttc
aggctggtcaagatccgattcctgattgaggatataaatgacaacgctccacttttccca
tccacggtcatcaatatctctatccctgagaacaccgcgatcaattcccgctattccgtc
ccctccgctgtcgatcctgatattggagtgaatggcattcaacattatgaacttcttaag
cccaaaacaacttcgaaaaggacttttggatccattacaaatgaacagggtcaaaatgta
tttggacttgatataattgaaacacctgaaggagacaagtggccccagttgatagtgcaa
caaattcttgatagggagcagaaggacacctatgtgatgaagattaaagtggaggatggt
ggaaaccctccgagatccagcacggccattctccaagtcaccgtcactgatgtgaatgac
aaccgtccggtcttcaaggagaatgacattgaagtcagcgttcctgaaaatgcacccgtg
ggcacctccgtttctcaacttcatgccactgatgccgacttgggatccaacgcccagatt
cacttttattttagcagccaaatatccagcttagccaaaaggctgtttgccattgataac
atcactggtcttatcacagtcaaggagcccttggaccgggaggaatccccagtacacaaa
ttaacagttttggcaagcgatggcagttccacaccctccagggctaccgtaacagtgaac
gtcacagacattaacgataacatcccctccatagatacacggtacattatcaatccagtc
aacgggactgtgttactgtccgagaaagcaccgctcaatactaagattgccctgataacc
gtaatggataaggatgctgatcttaatggcaaagttacttgcttcacagaccacgatgtc
cccttcaggttaaagccggtgtttgacaatcagtttctccttgaaacagctactttctta
gactacgaggccaccagagaatatgccatcaaaatagtggcctcggattcaggaaaacca
cccttgaaccaatctgcaatgctattgatcaaaatcaaagatgaaaacgacaataccccg
gtgttcacgcaacctgtgatcgggctctccattcctgagaataacgctcctggaacccag
ctgaccaagataagtgctaccgatgccgacagcggccgcaatgctgaaatcagttacatg
ctgggattggatgctccccctattttcaacctggatcgccgtacagggattctgacagct
gtgagaaagctggatagagaaaaacaagatcgctactcattcacagtgctggcgaaagat
aacggcatgccacctttgcaaaccaatgccaccgtgactgtttctgtcttggaccaaaac
gacaacagccccgctttcacacacaacgaatacaacttctacgtgccagaaaatctaccc
atgtacggcactgttggactgatcactgtgacagatgcggactctggagaaaatgcaata
gtgaccttgtctatattaaatggcagagataatttcattatcgatcctctcactggagtc
ataaggccgaatattacttttgacagggagcagcaaggatcttatacttttcaggtgaaa
gcggtggatgggggcaggctgccacgcacctccacagctaaagtgactatcaatgttgtc
gatgtgaacgacaacagacctgttttcgtcactccttccaccaactactcctacgacttg
gttccgatgtctgccagtcctggctccgtagtgacaaaagtgtttgctgtggacaatgat
actgggatgaacgccgagctgcgttatagcattattggtgggaattcacgagggttgttt
atgatcgatcagttaactggcaacgtcaccttgaaggagaaagtcatctcagcagatcat
gggttgcacagactggtaatcaaagtcaacgatttaggacagcctgaatctttatacacc
atagcactagtgcatttatttgtgaatgaaacagtcaccaacggatcctacgtccaagag
ttggtgcgccgaaacatggaaacaccggttggccaaaacgtcggggatggagacattacc
ccacaaaccaatgactatgtcaaaatcatcattgccattatcgcaggcaccatgacagtg
atactggtcatttttgtgacagctctggtacgttgtcgccaaactcctaggcacaaagtg
gtccagaaaagcaagcagagcggcgagtgggtttccccaaatcaagaaaaccgtcagatc
aagaagaagaagaagaagaagaagcggtctcccaaaagccttcttctaaactttgtgacc
attgaagaatctaagcctgatgatcctggccatgaacacatcaatggcaccttggacatt
cctgtagagctagaagaacagactatgggaaaatataactgggccacgacaccaaccact
tttaaacctgacagcccagatttagcaaagcactacaagtctgccactccgcagcccacg
tttcagattaaacctgagactccagtaccaccgaagaaacaccacgtcatacaggaactg
cctctggataacacatttgtggtgggttgtgattccctctccaagtgttcttccagtagc
tcggacccatacagtgtctccgaatgcagctgtcaaggagggttcaaggctcctggctct
gtccacaccagacagctctga
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integrated database retrieval system
