Thamnophis sirtalis (common garter snake): 106555916
Help
Entry
106555916 CDS
T06107
Symbol
TAF4
Name
(RefSeq) transcription initiation factor TFIID subunit 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
106555916 (TAF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsr03021
]
106555916 (TAF4)
03036 Chromosome and associated proteins [BR:
tsr03036
]
106555916 (TAF4)
Transcription machinery [BR:
tsr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
106555916 (TAF4)
Coactivators
SAGA/TFTC/STAGA complex
106555916 (TAF4)
Chromosome and associated proteins [BR:
tsr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
106555916 (TAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF4
TAFH
tRNA-synt_1c
Motif
Other DBs
NCBI-GeneID:
106555916
NCBI-ProteinID:
XP_013930327
UniProt:
A0A6I9Z164
LinkDB
All DBs
Position
Unknown
AA seq
1001 aa
AA seq
DB search
MGLSGPEITKPGAGGVQGSVINHNARSQGSALDGTTTTSSTTTTNVQGGSEAAITPGTLN
QGKSVVISTMATALSTRNGKIGTTAVQTLNGSNVVMNSHASFSATPVTANPTVVPAVAPL
VNNGPGNIGKVNTVNAVLPSASNTVIQTSFLGPGVSSASSPSPTVISSQQPPNIGTGGPT
VALVRPPIHAAGPLAAATQNGSSTVINSTINVGGFPTAAVAAATVGSGVSLQTSLVNSQP
GSGVSAAAPTTQIIKAESPKTIVQTVTQQQTLAAAGQPSTTGGNMIIGQTMQAGLPNVAP
NPGGVPPGPPGTPTGLAKGAANTVAQSLPRTATATTSGIRATLTPTVLAPRLPQPSQNPT
NIQNFQLPPGMVIVRSESGQLLMIPQHALAQMQAQAHAQSQSQTTMTPRPATSTSASPVQ
LSTVQAPGTPIIARQVAPTTIIKQVSQAQTTVQPTTTLQRPPVVQPQIVLGSPAQTTALG
TATTVQTGTPQRTVQGATATSTAATETMENVKKCKNFLSTLIKLASSGKQSTETAANVKE
LVQNLLDGKIEAEDFTSRLYRELNSSPQPYLVPFLKRSLPALRHLTPDSAAFIQQSQNQQ
PLTQPTTALTAVMLSSSVQRTAGKTTATVTSTLQQPVISLTQPTQVGVGKQGQPTQVVIQ
QSQKQGTLIRPPQVTLTQTPMVALRPPHNRIMLTAPQQIQLNALQTVPVVKQTVLPGTKA
LSTLSTQAAIAQKNKLKEPGGGSFRDDDDINDVASMAGVNLSEESARILATNSELVGTLT
RSCKDETFLLPTPLQRRILEIGKKHGITEIHPDVASYVSHATQQRLQNLVEKVSETAQQR
NISYKDDDRYEQASDVRAQLKFFEQLDQIEKQRKDEQEREILMRAAKSRSRQEDPEQLRL
KQKAKEMQQQELAQMRQRDANLTALAAIGPRRKRKLDSPGSGSGTEGSSPSVAVPGCSGI
GTTRQFTRQRITRVNLRDLIFCLENERETSHSLLLYKAFLK
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atgggactcagtggccccgagatcaccaagccaggagccggtggagtgcaagggagtgtt
atcaatcataatgccaggtcccagggttctgcgttggatgggaccactacaactagcagc
accaccaccacaaatgtccaaggtggctctgaagctgctattaccccagggacccttaat
cagggcaaatcagtggtaatcagtaccatggcaacagctttatccaccaggaatggtaaa
atcgggaccaccgcagtgcagactttgaacggaagtaacgtggtgatgaattcccacgca
tctttttcggccactcctgtgacagcgaatcctaccgtggtccctgcggttgcccctctt
gtgaacaatggacctggaaatattggaaaagtcaacaccgtgaacgctgtcttgccatct
gcttcaaatactgtcatccagacttctttccttggccctggagtgtcctctgcctcttca
ccttcacctacggtgatctcttcacaacagccccccaatatcgggaccgggggcccaacg
gtagcgttggtaaggccgcccatccatgcggcaggacccttggctgccgccacgcaaaat
gggagcagtactgtgatcaattcgaccatcaacgtgggaggttttccgactgcggctgtt
gctgccgccacggttggttcaggggtgtctctccagacttctcttgtgaacagccagcca
ggatctggggtatccgctgctgcacccaccacccagatcatcaaagcggagtctcctaaa
actatcgtgcaaacagtcacccagcagcaaactctggctgcagctggccagcctagtact
acagggggtaatatgatcattgggcaaactatgcaagctggcctacccaacgtagctcct
aatcctggcggagtacctcctggacctccaggtactcccactggtctggctaagggtgct
gccaatacagtggcgcagagcctgcccaggactgcaaccgcaaccaccagtggaatccga
gcaactttgactcccactgttttagcacctcgtctgcctcagccttctcagaatccaacg
aatattcagaactttcagttgccaccaggcatggtcattgtacgtagtgagagtggccag
ctgctgatgatccctcaacatgctttggcgcaaatgcaagcccaagcccatgcacagtcc
cagtctcaaacgaccatgactcctcgccctgccacatctaccagtgcttctccggtccag
ctctcgactgtgcaggcaccgggaactcctataattgctcggcaggtagcaccaaccact
ataatcaaacaagtgtctcaggcacagacaactgtacaacccacaacaacgttacagagg
ccgcctgtagtccagcctcagattgttctgggtagtcctgcacaaacaacagcattagga
acagcgactactgtgcagactggaacccctcaaaggacggtgcaaggagccacagcaacc
tccactgcggctacagaaaccatggaaaatgtgaagaaatgcaagaattttctctcaacg
ctaataaaactggcctcttctggaaagcagtcgacggaaactgcagctaatgtgaaagag
ctagtccagaacttgctggatggaaagattgaagcagaagacttcaccagtagattgtac
cgggaacttaattcttcacctcaaccttaccttgtgcctttcttgaagcggagcttacct
gccttgagacacctgactcctgactcagccgctttcattcagcaaagccagaatcagcag
cccttgacgcagcccacgaccgctctgaccgccgtgatgttgagcagctcggtccagcgt
acggcgggaaagaccactgccactgtcacgagtaccttgcagcagccggtcatcagcctc
acgcagccaacccaagtgggagttggcaagcaggggcagcccacgcaggtggttattcag
cagtctcaaaaacaaggtacattaattaggcctccgcaggtgacgttgacccagacgccc
atggtggctttgcggccaccgcacaaccgtattatgctgaccgctcctcaacaaattcag
ctgaatgcacttcagacagtccccgtggtaaagcaaacagtattaccaggaaccaaagct
ctttctactctttcaacccaagctgcaattgctcagaaaaataaactcaaagaacctggg
ggaggctcatttcgggatgatgatgatattaacgacgttgcctcgatggcaggagtcaat
ctatcggaagagagcgcacgtatattggccaccaattctgaattggtgggcactttaaca
aggtcgtgtaaagacgaaacttttcttctcccaacacccttgcaaagaaggatattagaa
ataggtaaaaagcatggaataacggaaatccatcctgacgtagctagttatgtatcacat
gcgacgcaacaaaggttacaaaaccttgtggagaaagtatcagagactgcccagcaaagg
aatatttcttacaaggatgatgatagatacgaacaggcaagtgacgtccgggcacaactc
aagttctttgaacaacttgatcaaatagaaaaacaacggaaagacgaacaagaaagggaa
atattaatgcgcgcagcaaagtctcgatctagacaagaagatccggagcagcttagattg
aaacaaaaggccaaggagatgcaacaacaggaactagcacaaatgcggcagagggatgct
aacttgactgcgttggctgcaataggacccagaaggaaaaggaaactggattctccaggg
tctggatcagggacagagggatccagtccaagtgtagcagtaccaggatgctccggaatc
gggacaaccagacagtttacacggcaaaggataacgcgggtgaacctcagggacctaata
ttttgtttagaaaacgagcgagagacgagccattcactattgctctataaagcattcctt
aaatag
DBGET
integrated database retrieval system
