Thamnophis sirtalis (common garter snake): 106555918
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Entry
106555918 CDS
T06107
Name
(RefSeq) ATP-dependent RNA helicase DHX8-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106555918
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tsr03041
]
106555918
Enzymes [BR:
tsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106555918
Spliceosome [BR:
tsr03041
]
Complex C
Other components
Step II factors
106555918
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1
DEAD
GIPC1_GH2
AAA_22
AAA_19
nSTAND3
AAA_16
Flavi_DEAD
T2SSE
nSTAND_NTPase5
ABC_tran
Sigma54_activ_2
PhoH
OB_RRP5_4th
TsaE
Presenilin
SAGA-Tad1
Motif
Other DBs
NCBI-GeneID:
106555918
NCBI-ProteinID:
XP_013930330
UniProt:
A0A6I9Z396
LinkDB
All DBs
Position
Unknown
AA seq
810 aa
AA seq
DB search
MADPTDELAKLEYLSLVSKVCTELDNHLGINDKDLAEFVISLAERNTNFDTFKTALVKNG
AEFTDSLVSNLLRLIQTMRPPAKASTSKDIIKPKTEKDKLKDLFPALCRPDNPMVRTMLD
EDDVKVAADALQELEALMPSAGRQEKHRNNEDQSKKKHRSRSRSRDRKRKRKSPSRSRTR
ERHKGKSRYRSRSRSPSWDHKERERAGEKSSERWRDKHVDRPPPEEPSIGDIYNGKVTSI
MQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTGSKTSLSM
KDVDQETGEDLNPNRRRNLIGESEETAMRNPDRPTHLSLVSAPEVEDDTLERKRLTRISD
PEKWEIKQMIAANVLSKEEFPDFDEETGILPKVDDEEDEDLEIELVEEEPPFLRGHTKQS
MDMSPIKIVKNPDGSLSQAAMMQSALAKERRELKQAQREAEMDSIPMGLNKHWVDPLPDV
DGRQIAANMRGIGMMPNDIPEWKKHAFGGNKASYGKKTQLSIIEQRESLPIFRLKDQLIQ
AVHDNQILIVIGETGSGKTTQITQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVSEEFGC
CLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEAHERTIHTDV
LFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEILYTKEPETDY
LDASLITVMQIHLTEPPEDVSSKVLFAMQGCVNPAFCELFHEGSVYFATLFLMGGGRCAP
ATSKDTTVPSHSVGFFFQAFAGLLLVEIYT
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atggcggatcctacggatgagcttgccaagctcgagtatctgtcgctcgtttccaaagtt
tgcacggagctcgacaaccatctgggcatcaacgacaaagatctagccgaatttgtgatc
agtcttgcagagagaaatacaaactttgataccttcaaaacagctctggtgaagaatggt
gctgaattcacagactcccttgtcagcaatctgctccgtcttatacagacaatgcggcct
cctgcaaaagcttccactagcaaagatattattaaaccaaaaacagaaaaagataagctg
aaggacttgtttccagccttgtgtcggccagataatcccatggtcaggacaatgctggat
gaagatgatgtgaaagtggctgccgatgctctccaagagctagaagctttaatgccatct
gcgggcagacaggaaaaacaccggaacaatgaagatcaatccaagaaaaagcataggagt
cgcagtcgtagtagagatcgaaagcggaaacgaaaatcaccctctcgctcccggacacgg
gaacgacataagggtaaatccagataccgctccaggagcagaagtcctagctgggaccac
aaagaaagagagagagctggtgagaaaagcagtgaaagatggagggataagcatgtggac
cgccctccacctgaagagccttccattggtgacatctacaatggcaaagttaccagcatc
atgcagtttggatgttttgttcagcttgaagggctcaggaaacgctgggaaggactggtc
cacatctcagaattacgtagggaaggaagagttgctaatgtggctgatgtagtgagcaag
ggccagcgggtcaaggtcaaagtactctccttcactggctcaaaaactagccttagcatg
aaagatgtagatcaagagacaggagaagatttgaacccaaatagacgtcgcaaccttatt
ggagagtctgaagagacagccatgagaaatccagacaggcccactcacttatctttggtc
agtgctcctgaagtagaagatgacacgttagaacgaaagcgtctcactcgtatttcagat
ccagaaaaatgggaaattaagcagatgattgctgcaaacgtgctttccaaggaggagttt
cctgactttgatgaagaaactggaatcttgccaaaggttgatgatgaggaagatgaggat
ctggaaattgaattggtagaagaggaaccaccgtttctgcgaggtcatacaaaacagagc
atggacatgagccccattaaaatagtgaagaatcctgatggctccctgtctcaagcagcc
atgatgcaaagtgcacttgctaaagagaggcgggaactgaagcaagcccagcgggaagca
gagatggattctattcccatggggctcaacaaacactgggtggatccccttccagatgtg
gatggaaggcaaattgcagccaacatgcggggcattggcatgatgcccaatgacatacct
gaatggaagaagcatgcttttggaggcaataaggcttcttatggaaaaaagacacaactg
tcaataattgaacagcgagaaagtcttccaatttttcgtctgaaagatcaacttatccag
gcagttcatgataaccagattctgattgtcattggtgagactggctctgggaaaactaca
cagatcacacagtaccttgctgaagctggctacaccacccgtgggaagatcggctgcact
cagcctcgtcgggtagctgccatgtctgttgctaagagggtttcagaagaatttggttgt
tgtctaggacaagaggttggttatactattcgatttgaggattgcactagtcctgaaacc
gtgatcaaatacatgacagatgggatgctgcttcgcgagtgcctcattgatccagatctg
acacagtatgcaatcataatgttggatgaagcccatgaacgcactatacatacggatgta
ctctttggtctcctgaaaaagacagttcagaagagacaagacatgaaattaatagtgacc
tcagctacactggatgcagttaaattctctcagtatttctatgaggctcctatctttacc
attcctggtaggacatacccagtcgagattctctacaccaaggaacctgagacggattac
ttggatgccagcctgattacagtcatgcagatccacttgacagaacctccagaggatgtg
tccagcaaggtattgtttgccatgcagggctgcgtgaaccccgccttctgtgagctgttc
catgagggatctgtctactttgccaccctctttctcatgggcggaggacgctgcgcgcca
gccacttcaaaagacacaacggttccatcccacagcgtcggcttcttcttccaagcgttt
gctggactcttacttgtggagatctacacttga
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