Thamnophis sirtalis (common garter snake): 106556116
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Entry
106556116 CDS
T06107
Symbol
SPOP
Name
(RefSeq) speckle-type POZ protein
KO
K10523
speckle-type POZ protein
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
106556116 (SPOP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tsr04121
]
106556116 (SPOP)
Ubiquitin system [BR:
tsr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
106556116 (SPOP)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MATH_2
BTB
BACK_BPM_SPOP
MATH
BACK
BTB_KLHL33
Motif
Other DBs
NCBI-GeneID:
106556116
NCBI-ProteinID:
XP_013930565
UniProt:
A0A6I9Z403
LinkDB
All DBs
Position
Unknown
AA seq
374 aa
AA seq
DB search
MSRVPSPPPPAEMSSGPVAESWCYTQIKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSG
ANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQ
RAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNSMNMVK
VPECRLADELGGLWENSRFTDCSLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNR
VEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVE
NAAEILILADLHSADQLKTQAVDFINYHASDVMETAGWKSMVVSHPHLVAEAYRSLASAQ
CPFLGPPRKRLKQS
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagggtaccgagtcctcctcctccggcagagatgtcaagcggacctgttgctgag
agctggtgttacactcaaattaaagtggtcaaattttcctacatgtggaccatcaataac
ttcagcttttgtcgagaggaaatgggtgaggtcatcaaaagttcaacattttcatcagga
gctaatgataaattgaaatggtgtttgcgtgtgaacccaaagggcttggatgaagaaagt
aaagattatctttccctctatctgttactggtcagttgtccaaagagtgaagtccgagcc
aaattcaagttctctattttgaatgcaaaaggagaagaaactaaagcaatggagagccag
agagcctatcggtttgtgcaaggcaaagattggggattcaagaagtttatcagaagagat
tttctcctagatgaggcgaatgggctccttccagatgacaagctcactctcttctgtgag
gtgagtgtagtacaggattctgtcaacatctctggtcagaattccatgaacatggtgaag
gtacctgaatgccgcttggctgatgaattgggaggcctctgggaaaactctcgcttcacg
gactgctccctgtgtgtagccggccaagagtttcaagctcacaaagccatattagcagcc
cgctctccagttttcagtgcaatgtttgaacatgagatggaagaaagtaaaaagaatcga
gttgaaatcaatgatgtggaacctgaagttttcaaagaaatgatgtgcttcatttatacg
ggaaaggcacctaatcttgacaaaatggctgacgatctgcttgcagctgctgacaagtat
gctttggaacgtttgaaagtgatgtgtgaagatgctttgtgcagcaatttgtcagtggag
aatgcagcagagatcctaattctggctgatctacacagtgctgaccagctaaaaactcag
gcagttgacttcataaactaccacgcttctgatgtcatggagactgcaggctggaagtcg
atggtagtatctcaccctcatttggtagcagaggcataccgttcactggcctctgcacag
tgcccctttctgggacccccacgcaaacgactgaagcaatcctaa
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