Thamnophis sirtalis (common garter snake): 106556822
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Entry
106556822 CDS
T06107
Symbol
RAG1
Name
(RefSeq) V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04068
FoxO signaling pathway
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
106556822 (RAG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tsr04121
]
106556822 (RAG1)
Enzymes [BR:
tsr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106556822 (RAG1)
Ubiquitin system [BR:
tsr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
106556822 (RAG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RAG1
RAG1_imp_bd
zf-RAG1
zf-C3HC4
zf-C3HC4_2
zf-RING_6
zf-RING_2
DUF4294
Motif
Other DBs
NCBI-GeneID:
106556822
NCBI-ProteinID:
XP_013931310
UniProt:
A0A6I9Z653
LinkDB
All DBs
Position
Unknown
AA seq
1046 aa
AA seq
DB search
MEKLPPPSINLCFGPEHLQQPYMKFSEWKFKLFKVRSLEKPLPEDSHQANCAKENVTGSL
NVTDEQPEAAAVMSQVPFETDTELNKNSLAREKDVFHISQREMEAHQANLQHLCRICGGS
LKTDPYKKCHPVHGPVDEETQALLRKKEKRATSWPDLLVKVFKIDVRGDIDTIHPTHFCY
NCWKVIQRKVSNAPHEAHLLEKDPVEWHPHSTSCDVCVTSFRGVKRKKTMLNSQLSKKLR
IIAGHTRKIRCIRKVKPLNNKSLMKKISNCKQIHLSTKILAIDYPVDFVKSISCQICEHI
LADPVETTCKHLFCRVCILKCLKVMGSYCPSCRYPCFPTDLVSPVKSFLSILNNLVLRCP
VKGCHEEVFLEKYCQHRSNHKGAESTDSYVYINKGGRPRQHLLSLTRRAQKHRLRELKLQ
VKDFAEKEEGGDVKSVCLTLFLLALRSRNEHRQADELEAIMQGKGSDLHPAVCLAIRVNT
FLSCSQYHKMYRTVKAITGRQIFQPLHALRTAEKSLLPGYHPFEWEPPLKNVSSNTDVGI
IDGLSGIQQSVDDYPVDTIAKRFRYDVALVAALMDLEEEILEGLKTHDLDDYLKGPYTVV
IKESCDGMGDVSEKHGCGPAVPEKAVRFSFTLMSVTVTHEHGSARIFEENKPNSELCCKP
LCLMLADESDHETLTAILSPLITEREAMKHSALILYMAGIPRIFKFIFRGTGYDEKLVRE
VEGLEASGSTYICTLCDATRQEASQNLILHSVTRNHAENLERYEVWRSNPYHEAVDELRH
RVKGVSSKPFIETVPSIDALHCDIGNAAEFYKIFQFEIGEVYKNTSATKEERKRWQSTLD
KHLRKKMNLKPVTRMNGNFARKLMSRETVDAVCELIKSEERHEALRELMDLYLKMKPVWR
SSCPTKECPELVCQYSFNSQRFAELLSTKFSYRYDGKITNYFHKTLAHVPEIIERDGSIG
AWASEGNESGNKLFRRFRKMNARQSKCYEMEDVLKHHWLYTSKYLQKFMNAHNTLKSQMV
QIRPDQTESDIMMMEDSLETPDFMDF
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atggagaagctacctccgccaagcataaacttgtgttttggaccagaacatctccaacag
ccgtatatgaaattttctgaatggaaattcaagctgttcaaagtgagatcgcttgaaaag
cctcttcctgaagacagccaccaggctaactgtgctaaagaaaatgtgacagggtctctg
aacgtcactgacgaacaacctgaggcagcagctgtaatgtcacaagtgccctttgaaaca
gacactgagttgaataaaaatagcttggcaagagagaaagatgtctttcacatcagccaa
agggagatggaagctcaccaagcaaacttgcagcacctctgtcgcatttgtggaggctca
ctgaaaactgacccttacaaaaagtgtcatccagttcatgggccagtggatgaggagacc
caggctcttttgagaaagaaagagaaaagagccacttcctggccagatcttcttgtcaaa
gtttttaagatcgatgtaaggggagatattgacacaatccaccctactcatttttgttac
aattgttggaaagtcattcaaagaaaagtcagcaatgccccccatgaagcacatcttctt
gagaaagacccagtggaatggcatccccattcaacaagctgtgacgtttgtgtcacttcc
tttcgtggagtcaagaggaagaaaacaatgctgaattcacagctgagcaaaaaactcagg
attattgctgggcatacgagaaaaataagatgcataagaaaggtaaagccactgaataac
aaaagtttgatgaaaaagatttcaaactgtaagcaaatccatctcagtacaaaaatcctt
gcaatagactaccctgtggactttgtaaagtcaatatcttgccagatctgcgaacacatc
ctggctgatccagtagaaacgacgtgtaaacacttattctgcagagtctgtattcttaaa
tgtcttaaagtaatgggaagctattgcccatcctgccgatatccttgttttcctactgat
ttagtgagccctgtaaaatccttcctaagcatcctcaacaatttggttttgagatgccca
gtaaaaggctgtcatgaggaggtctttttggaaaaatactgccaacatcgttctaatcat
aaaggggcagaaagtacagacagctatgtctatatcaacaaaggtggccgaccgagacaa
catttgctgtcactgacccggagagctcaaaagcaccgcttgagagaactcaagcttcaa
gtaaaagattttgcagaaaaagaagaaggaggagatgtgaagtctgtgtgtctaactttg
ttccttctggctttgagatctagaaatgagcacagacaagcagatgaattggaagctata
atgcaagggaagggatcggaccttcatccagctgtttgtttggcaatccgagttaacacc
tttcttagctgcagccaatatcataaaatgtacaggacagtaaaggcaattacaggaagg
caaattttccagcctttgcatgctctccgaacagctgagaagtcccttctgcctggttat
cacccctttgaatgggagcctcctttgaaaaatgtatctagtaacacagatgtaggcatt
attgatgggctctcaggaatacaacagtctgtggatgactacccagtggatacaattgca
aaacgatttcgatatgatgtagctttggtggctgcccttatggacctagaagaagaaatt
ttagaaggactgaaaactcatgacttggatgactatttgaaaggaccctacactgtagtg
attaaagaatcctgcgatggaatgggagatgtcagtgaaaagcatggctgtggcccagcg
gttcccgaaaaggctgttcgattctccttcaccctcatgagtgtcactgtaactcatgaa
catggcagtgcaaggatttttgaagaaaacaaacccaattcagagttgtgttgtaagcct
ttgtgcctaatgctggccgatgagtcagatcacgagactctcactgccatcctgagtcct
cttataacagaacgagaagccatgaaacatagtgcattgatactttatatggctggtatt
cctagaattttcaaattcatatttaggggcactggatatgatgaaaaacttgtccgtgaa
gttgagggtcttgaagcatcaggctctacttacatttgtacactttgtgatgccacacgg
caagaggcctctcagaacctcatcctgcattctgtaaccaggaatcatgctgaaaaccta
gaacgatatgaagtgtggaggtccaatccttaccatgaagctgttgatgaactacgtcac
agagtgaaaggcgtttcttcaaagccttttattgagactgtgccttcaatagacgcactt
cactgtgatattggcaatgccgctgaattttacaaaatattccagtttgagattggtgag
gtgtacaaaaataccagtgcaaccaaagaagagagaaagaggtggcagtcaactcttgac
aagcaccttagaaaaaagatgaatttgaaacctgtaacaaggatgaatggaaattttgca
agaaaactcatgagtagagagactgtggatgcagtctgtgaattaataaaatctgaggag
aggcatgaagccctcagagaattaatggacctttaccttaagatgaaaccagtatggagg
tcttcatgtccaaccaaagaatgtccagaacttgtatgtcaatatagtttcaactctcag
agattcgctgagttgctgtcaactaaattcagttatagatatgatgggaagattaccaat
tattttcataaaacacttgctcatgttccagaaattatagaacgggatggttccattggt
gcatgggcaagtgaaggaaatgagtcaggcaacaaactgttcagacgctttcgaaagatg
aatgccaggcagtcaaaatgttatgagatggaagatgttttgaagcatcattggttatat
acttcaaagtatttacaaaaattcatgaatgctcataatacattgaaaagccagatggtc
caaattaggccagaccagactgagagtgatatcatgatgatggaggattctttggagact
cctgatttcatggacttctaa
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integrated database retrieval system
