Thamnophis sirtalis (common garter snake): 106556892
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Entry
106556892 CDS
T06107
Symbol
CAPRIN1
Name
(RefSeq) caprin-1
KO
K18743
caprin-1
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106556892 (CAPRIN1)
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
106556892 (CAPRIN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Caprin-1_C
Caprin-1_dimer
Motif
Other DBs
NCBI-GeneID:
106556892
NCBI-ProteinID:
XP_013931409
UniProt:
A0A6I9Z5C5
LinkDB
All DBs
Position
Unknown
AA seq
700 aa
AA seq
DB search
MPSATSSAMASNGSKAGSEATVAAAAASSQAAVSGGSTSSVQTEAMKQILGVIDKKLRNL
EKKKGKLDDYQDRMNRGERLNQDQLDAVSKHQEVSNNLEFAKELQRCFMALSQDIQKTIK
KTARREQLMREETEQKRLKTVLELQYILDKLGDDEVRSDLKQGTNGVSILTETELSTLDE
FYKLVEPERDMNIRLNEQYEQASIHLWDLLEGKEKPVCGTTYKALKEIVERVLQTSYFDS
THNHQNGLCEEEETASAPAVEDSVTETEPEPTEEYTEPSEVESTEYVNRQFMAEAQFSNN
EKEQVDEWTVETVEVVNSLQQPQATSPPVPDAHTLTAVAQADPLIRRQRVQDLMAQMQGP
YNFMQDSMLEFENQALDPAIVSAQPMNPQTLQIPQMVCPPVHAESRLAQTTQVPVQPEAT
QVPLVSSTSEGYTASQPTYQPSHSTEQRPQKESIDQIQASITLSTDQTPTSSPLPVASQP
QVFQAASSKPLHSSGINVNAAPFQSMQTVFNMNAPVPPVNEPETLKQQNQYQTGYSQTFS
NQPHPVEQSELQQEQQLQTVVGTYHGSPDQSHQVAGNHQQPPQQNTGFPRNGQPYYNSRG
VSRGGSRGTRGLMNGYRGPANGFRGGYDGYRPSFSNTPNSGYTQAQFNAPRDYPNYQRDG
YQQNFKRGSGQSGPRGAPRGRGGPPRPNRGMAQMNAQQVN
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgccctcggccaccagcagcgcgatggcgagtaacggcagtaaagcgggcagcgaggca
acggtggcggcggcggctgcttcttctcaggcggcggtttcgggtggcagtacgagttcg
gtgcagacggaggccatgaagcagattttgggtgtcatcgataagaaactgcgcaatttg
gagaagaaaaagggcaaacttgatgattatcaagatcgaatgaacagaggagaacgcctt
aaccaagatcagctggatgctgtgtcaaagcaccaggaagtcagtaataatctggaattt
gccaaggaattgcagaggtgtttcatggctctaagtcaagatattcaaaaaacaataaag
aagacagcccgacgggaacagttaatgagagaagaaactgaacaaaaacgcttaaagaca
gtacttgaattgcagtatattttggacaagttgggtgatgatgaagtgcgcagtgaccta
aaacaaggaacaaatggggtatctatattaacagaaacagaactatccacacttgacgag
ttttacaagctggttgaacctgaacgtgacatgaacataaggttgaatgaacaatatgaa
caggcatccattcatttgtgggatctattggaagggaaggaaaaacctgtatgcggaaca
acatataaagccctaaaagaaattgttgaacgcgttcttcaaacaagttattttgacagt
actcacaaccatcaaaatggactttgtgaagaagaggagacagcatctgcacccgcagtt
gaagattctgtgacagaaactgagccagaaccaacagaagaatacactgaaccaagtgaa
gttgaatcaacagagtatgtaaacagacagttcatggcagaggctcagttcagcaataat
gaaaaggaacaagtagatgaatggacagttgaaactgttgaggtggtaaattcactccag
caaccacaggctacatctcctccagttccagatgcccatacgcttacagcggtagctcag
gcagacccacttattagaagacaacgggtgcaggatcttatggcacaaatgcaaggccca
tataactttatgcaggactctatgctggaatttgagaaccaagcacttgaccctgctatt
gtttcagctcagcctatgaatccacaaactttgcagataccacagatggtttgccctcca
gttcatgctgaatctagacttgcacaaacaacccaggttcctgtacaacctgaagctaca
caggtccccttggtttcttccacaagtgagggatatacagcatcccagcccacgtatcag
ccttcccattcaacagaacagcgacctcagaaagaatcaattgaccagattcaggcttca
ataaccttaagtactgatcagacaccaacatcgtcgccacttccagttgcatcccagcct
caggtatttcaggctgcctctagcaaacccttgcatagcagcggaatcaatgttaatgca
gctccattccagtccatgcagacggtatttaacatgaatgcacctgttcctcctgtcaat
gaaccagaaactctaaagcaacaaaatcaataccagaccggttacagccagacattctcc
aatcagccccatccagtagaacaatcagaacttcagcaagaacagcagcttcagacagtg
gttggtacttaccatggttccccggaccagtcccatcaagtggcaggtaaccaccagcag
cctccacaacagaatactgggttcccacgtaacggtcagccttattataacagccgggga
gtgtctcgtggtggatcacgcggcactcgaggcttaatgaatggatacaggggaccagcc
aatgggtttagaggaggatatgatggctaccgtccttcattttccaacactccaaatagt
ggttacacccaggcacagtttaatgctccacgagactatcccaactaccagcgagatgga
tatcaacagaatttcaaacgtggctctggacaaagtggccctcggggagctcctcgaggt
cgtggaggacccccaagacccaacaggggaatggctcaaatgaatgctcagcaagtgaat
taa
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